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Large genetic diversity of Arcobacter butzleri isolated from raw milk in Southern Italy

机译:从意大利南部的原奶中分离到的阿兹杆菌弧菌的巨大遗传多样性

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Arcobacter butzleri is a zoonotic foodborne pathogen able to cause enteric and extraintestinal diseases. Its occurrence in foodstuff is well recognized worldwide but data on its presence in foods from Southern Italy are scarce. In this study the results on the occurrence and genotyping of Arcobacter spp. in bulk milk samples collected in Southern Italy are reported. Out of 484 samples, 64 (13.2%) resulted positive for the presence of Arcobacter spp. Using Real Time PCR but as few as 31.2% of these samples turned out as positive by using the cultural method, showing an overall prevalence of 4.1%. All isolates were identified as A. cryaerophilus using the biochemical identification whilst the sequencing of the atpA. gene revealed that all the isolates were A. butzleri Among the confirmed isolates, 16 different Sequence Types (ST) were identified using the Multi Locus Sequence Typing (MLST), 14 (87.5%) of which were previously unreported. Our survey reveals the presence of A. butzleri in bulk tank milk from Southern Italy and highlights the discrepancy between the two approaches used both for the detection (i.e., real time PCR vs cultural method) and the identification (i.e., biochemical test vs aptA sequencing) of Arcobacter spp In addition, a large genetic diversity among the isolates was detected and this makes the identification of source of the infections very challenging in outbreaks investigation.
机译:牛油杆菌是一种人畜共患的食源性病原体,能够引起肠道和肠外疾病。其在食品中的存在已为全球所公认,但有关意大利南部食品中存在的数据却很少。在这项研究中的结果,对杆状杆菌属的发生和基因分型。据报道在意大利南部收集的散装牛奶样品。在484个样本中,有64个(13.2%)呈阳性,表明存在杆状杆菌。使用实时荧光定量PCR,但使用培养法检测到这些样品中只有31.2%呈阳性,总体患病率为4.1%。在对atpA进行测序时,通过生化鉴定将所有分离物鉴定为嗜酸链球菌。该基因揭示所有分离株均为布氏芽孢杆菌。在确认的分离株中,使用多基因座序列分型(MLST)鉴定出16种不同的序列类型(ST),其中14种(87.5%)以前未报道。我们的调查揭示了意大利南部散装罐装牛奶中存在牛油曲霉,并强调了用于检测(即实时PCR与培养方法)和鉴定(即生化测试与aptA测序)的两种方法之间的差异此外,在分离株之间检测到很大的遗传多样性,这使得在爆发调查中鉴定感染源变得非常困难。

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