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COVIDNet-CT: A Tailored Deep Convolutional Neural Network Design for Detection of COVID-19 Cases From Chest CT Images

机译:Covidnet-CT:量身定制的深度卷积神经网络设计,用于检测胸部CT图像的Covid-19案例

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The coronavirus disease 2019 (COVID-19) pandemic continues to have a tremendous impact on patients and healthcare systems around the world. In the fight against this novel disease, there is a pressing need for rapid and effective screening tools to identify patients infected with COVID-19, and to this end CT imaging has been proposed as one of the key screening methods which may be used as a complement to RT-PCR testing, particularly in situations where patients undergo routine CT scans for non-COVID-19 related reasons, patients have worsening respiratory status or developing complications that require expedited care, or patients are suspected to be COVID-19-positive but have negative RT-PCR test results. Early studies on CT-based screening have reported abnormalities in chest CT images which are characteristic of COVID-19 infection, but these abnormalities may be difficult to distinguish from abnormalities caused by other lung conditions. Motivated by this, in this study we introduce COVIDNet-CT, a deep convolutional neural network architecture that is tailored for detection of COVID-19 cases from chest CT images via a machine-driven design exploration approach. Additionally, we introduce COVIDx-CT, a benchmark CT image dataset derived from CT imaging data collected by the China National Center for Bioinformation comprising 104,009 images across 1,489 patient cases. Furthermore, in the interest of reliability and transparency, we leverage an explainability-driven performance validation strategy to investigate the decision-making behavior of COVIDNet-CT, and in doing so ensure that COVIDNet-CT makes predictions based on relevant indicators in CT images. Both COVIDNet-CT and the COVIDx-CT dataset are available to the general public in an open-source and open access manner as part of the COVID-Net initiative. While COVIDNet-CT is not yet a production-ready screening solution, we hope that releasing the model and dataset will encourage researchers, clinicians, and citizen data scientists alike to leverage and build upon them.
机译:2019年冠状病毒疾病(Covid-19)大流行继续对世界各地的患者和医疗保健系统产生巨大影响。在对抗这种新型疾病的斗争中,需要一种快速和有效的筛选工具来鉴定感染Covid-19的患者,并且已经提出了作为可以用作的关键筛选方法之一的患者。补充RT-PCR测试,特别是在患者经受非Covid-19相关原因进行常规CT扫描的情况下,患者具有恶化的呼吸状态或开发需要加速护理的并发症,或者怀疑患者被怀疑是Covid-19阳性但是具有否定RT-PCR测试结果。关于基于CT的筛查的早期研究已经报道了胸部CT图像的异常,其是Covid-19感染的特征,但这些异常可能难以区分其他肺状况引起的异常。由此激励,在本研究中,我们介绍了Covidnet-CT,这是一种深度卷积神经网络架构,用于通过机器驱动的设计探索方法检测来自胸部CT图像的Covid-19案例。此外,我们介绍了Covidx-CT,这是一种基准CT图像数据集,来自中国国家生物信息中心收集的CT成像数据,包括104,009次患者患者的104,009张图像。此外,为了获得可靠性和透明度的利益,我们利用了可解释的性能验证策略来调查Covidnet-CT的决策行为,并确保CovidNet-CT基于CT图像中的相关指标进行预测。 CovidNet-CT和Covidx-CT数据集都可以以开源和开放的访问方式可用,作为Covid-Net计划的一部分。虽然Covidnet-CT尚未成为生产准备筛选解决方案,但我们希望释放模型和数据集将鼓励研究人员,临床医生和公民数据科学家相似地杠杆和建立在他们身上。

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