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首页> 外文期刊>Applied and Environmental Microbiology >Genomic and Biochemical Studies Demonstrating the Absence of an Alkane-Producing Phenotype in Vibrio furnissii M1
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Genomic and Biochemical Studies Demonstrating the Absence of an Alkane-Producing Phenotype in Vibrio furnissii M1

机译:基因组和生化研究表明弧菌M1没有产烷烃的表型。

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Vibrio furnissii M1 was recently reported to biosynthesize n-alkanes when grown on biopolymers, sugars, or organic acids (M. O. Park, J. Bacteriol. 187:1426-1429, 2005). In the present study, V. furnissii M1 was subjected to genomic analysis and studied biochemically. The sequence of the 16S rRNA gene and repetitive PCR showed that V. furnissii M1 was not identical to other V. furnissii strains tested, but the level of relatedness was consistent with its assignment as a V. furnissii strain. Pulsed-field gel electrophoresis showed chromosomal bands at approximately 3.2 and 1.8 Mb, similar to other Vibrio strains. Complete genomic DNA from V. furnissii M1 was sequenced with 21-fold coverage. Alkane biosynthetic and degradation genes could not be identified. Moreover, V. furnissii M1 did not produce demonstrable levels of n-alkanes in vivo or in vitro. In vivo experiments were conducted by growing V. furnissii M1 under different conditions, extracting with solvent, and analyzing extracts by gas chromatography-mass spectrometry. A highly sensitive assay was used for in vitro experiments with cell extracts and [14C]hexadecanol. The data are consistent with the present strain being a V. furnissii with properties similar to those previously described but lacking the alkane-producing phenotype. V. furnissii ATCC 35016, also reported to biosynthesize alkanes, was found in the present study not to produce alkanes.
机译:最近报道了呋喃弧菌M1在生物聚合物,糖或有机酸上生长时会生物合成正构烷烃(M. O. Park,J. Bacteriol。187:1426-1429,2005)。在本研究中,弧菌V1进行了基因组分析并进行了生化研究。 16S rRNA基因的序列和重复PCR显示,弗氏弧菌M1与其他测试的弗氏弧菌菌株不同,但相关性水平与其作为弗氏弧菌菌株的分配是一致的。脉冲场凝胶电泳显示约3.2和1.8 Mb的染色体带,类似于其他弧菌菌株。来自弗氏弧菌M1的完整基因组DNA被测序,覆盖率为21倍。烷烃的生物合成和降解基因无法鉴定。此外,弗氏弧菌M1在体内或体外均未产生可证明水平的正构烷烃。通过在不同条件下生长弗氏弧菌M1,用溶剂提取,并通过气相色谱-质谱法分析提取物来进行体内实验。高灵敏度的测定用于细胞提取物和[14C]十六烷醇的体外实验。数据与本菌株是弯曲弧菌的菌株相一致,该菌株具有与先前描述的那些相似的性质,但是缺乏产生烷烃的表型。在本研究中还发现了V. furnissii ATCC 35016,它也可以生物合成烷烃,但并未产生烷烃。

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