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Mechanisms and Rates of Bacterial Colonization of Sinking Aggregates

机译:下沉骨料的细菌定植机理和发生率

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Quantifying the rate at which bacteria colonize aggregates is a key to understanding microbial turnover of aggregates. We used encounter models based on random walk and advection-diffusion considerations to predict colonization rates from the bacteria's motility patterns (swimming speed, tumbling frequency, and turn angles) and the hydrodynamic environment (stationary versus sinking aggregates). We then experimentally tested the models with 10 strains of bacteria isolated from marine particles: two strains were nonmotile; the rest were swimming at 20 to 60 μm s?1 with different tumbling frequency (0 to 2 s?1). The rates at which these bacteria colonized artificial aggregates (stationary and sinking) largely agreed with model predictions. We report several findings. (i) Motile bacteria rapidly colonize aggregates, whereas nonmotile bacteria do not. (ii) Flow enhances colonization rates. (iii) Tumbling strains colonize aggregates enriched with organic substrates faster than unenriched aggregates, while a nontumbling strain did not. (iv) Once on the aggregates, the bacteria may detach and typical residence time is about 3 h. Thus, there is a rapid exchange between attached and free bacteria. (v) With the motility patterns observed, freely swimming bacteria will encounter an aggregate in <1 day at typical upper-ocean aggregate concentrations. This is faster than even starving bacteria burn up their reserves, and bacteria may therefore rely solely on aggregates for food. (vi) The net result of colonization and detachment leads to a predicted equilibrium abundance of attached bacteria as a function of aggregate size, which is markedly different from field observations. This discrepancy suggests that inter- and intraspecific interactions among bacteria and between bacteria and their predators may be more important than colonization in governing the population dynamics of bacteria on natural aggregates.
机译:量化细菌在聚集体中的定殖速率是了解聚集体微生物更新的关键。我们使用基于随机游动和对流扩散考虑的相遇模型,根据细菌的运动模式(游动速度,翻滚频率和转角)和流体动力环境(静止聚集体与下沉聚集体)预测定居率。然后,我们用从海洋颗粒中分离出的10种细菌对这些模型进行了实验测试:两个菌株不运动;第二个菌株不运动。其余人在20至60μms?1下游泳,翻滚频率不同(0到2 s?1)。这些细菌在人造聚集体(静止的和下沉的)中定植的速率与模型预测基本吻合。我们报告了一些发现。 (i)运动菌迅速聚集在聚集体上,而非运动菌则没有。 (ii)流量增加了定殖率。 (iii)翻滚菌株比未浓缩的菌落定植富集了富含有机底物的聚集体的速度更快,而非翻倒菌株则没有。 (iv)一旦在聚集体上,细菌可能会分离,典型的停留时间约为3小时。因此,附着细菌和游离细菌之间存在快速交换。 (v)观察到运动模式后,自由游泳的细菌将在<1天之内遇到典型的上层海洋聚集体浓度的聚集体。这甚至比饥饿的细菌消耗掉它们的储备还要快,因此细菌可能仅依靠聚集体来获取食物。 (vi)定殖和脱离的最终结果导致附着细菌的预期平衡丰度随聚集体大小的变化而变化,这与实地观察结果明显不同。这种差异表明,在控制自然聚集体上细菌的种群动态时,细菌之间以及细菌与其捕食者之间的种间和种内相互作用可能比殖民化更为重要。

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