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首页> 外文期刊>The Journal of Veterinary Medical Science >Detection and Confirmation of Mycobacterium avium subsp. paratuberculosis in Direct Quantitative PCR Positive Fecal Samples by the Manual Fluorescent MGIT Culture System
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Detection and Confirmation of Mycobacterium avium subsp. paratuberculosis in Direct Quantitative PCR Positive Fecal Samples by the Manual Fluorescent MGIT Culture System

机译:鸟分枝杆菌亚种的检测和确认。手动荧光MGIT培养系统直接定量PCR阳性粪便样品中的副结核病

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References(23) Cited-By(1) An efficient protocol for the manual fluorescent MGIT culture system combined with rapid confirmation of Mycobacterium avium subsp. paratuberculosis (MAP) growth in the broth culture was established and evaluated for the detection of viable MAP in direct quantitative PCR (QPCR) positive bovine feces. Manually detected fluorescence emissions from MGIT tubes were analyzed objectively using an open source software, ImageJ. For molecular confirmation of MAP growth, DNA samples harvested by simply boiling the broth, an inexpensive and time- and labor-saving DNA preparation method, yielded adequate results. The sheep strain of MAP required longer incubation time relative to the cattle strain, suggesting that the MGIT system may not support well the growth of ovine isolates as described previously. Of 61 direct QPCR positive bovine feces, the recovery rate of MAP in the MGIT system (62.3%) was significantly higher (P0.05) than that using 7H10 agar-based slants (44.3%). The time to obtain a final result for fecal culture by the MGIT system was several weeks earlier compared to solid media. In MGIT culture positive samples, the time to detect fluorescence was correlated with the DNA quantity detected in fecal QPCR. As a positive result in the direct fecal QPCR test does not mean fecal excretion of viable MAP, bacterial isolation by fecal culture could be conducted to verify the QPCR result. For this purpose, the manual MGIT system is a sensitive and rapid culture method at least for bovine samples.
机译:参考文献(23)Cited-By(1)一种手动荧光MGIT培养系统的有效方案,结合快速确认鸟分枝杆菌亚种。建立肉汤培养中的副结核病(MAP)生长,并评估其在直接定量PCR(QPCR)阳性牛粪中检测有活力的MAP的能力。使用开源软件ImageJ客观地分析了从MGIT管手动检测到的荧光发射。为了对MAP的生长进行分子确认,通过简单地煮沸肉汤(一种廉价且省时又省力的DNA制备方法)收集的DNA样品产生了足够的结果。相对于牛品系,MAP的绵羊品系需要更长的孵育时间,这表明MGIT系统可能无法很好地支持绵羊分离株的生长,如前所述。在61个直接QPCR阳性牛粪中,MGIT系统中MAP的回收率(62.3%)显着高于7H10琼脂基斜面(44.3%)(P <0.05)。与固体培养基相比,通过MGIT系统获得粪便培养最终结果的时间要早​​几周。在MGIT培养阳性样品中,检测荧光的时间与粪便QPCR中检测到的DNA量相关。由于直接粪便QPCR试验的阳性结果并不意味着粪便排泄了可行的MAP,因此可以通过粪便培养进行细菌分离以验证QPCR结果。为此,手动MGIT系统至少对于牛样品是一种灵敏且快速的培养方法。

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