首页> 外文期刊>GigaScience >A high-coverage draft genome of the mycalesine butterfly Bicyclus anynana
【24h】

A high-coverage draft genome of the mycalesine butterfly Bicyclus anynana

机译:Mycalesine蝴蝶Bicyclus anynana的高覆盖草案基因组

获取原文
           

摘要

The mycalesine butterfly Bicyclus anynana , the “Squinting bush brown,” is a model organism in the study of lepidopteran ecology, development, and evolution. Here, we present a draft genome sequence for B. anynana to serve as a genomics resource for current and future studies of this important model species. Seven libraries with insert sizes ranging from 350 bp to 20 kb were constructed using DNA from an inbred female and sequenced using both Illumina and PacBio technology; 128 Gb of raw Illumina data was filtered to 124 Gb and assembled to a final size of 475 Mb (~×260 assembly coverage). Contigs were scaffolded using mate-pair, transcriptome, and PacBio data into 10 800 sequences with an N50 of 638 kb (longest scaffold 5 Mb). The genome is comprised of 26% repetitive elements and encodes a total of 22 642 predicted protein-coding genes. Recovery of a BUSCO set of core metazoan genes was almost complete (98%). Overall, these metrics compare well with other recently published lepidopteran genomes. We report a high-quality draft genome sequence for Bicyclus anynana . The genome assembly and annotated gene models are available at LepBase ( http://ensembl.lepbase.org/index.html ).
机译:麦卡莱斯碱蝴蝶Bicyclus anynana(“斜眼棕色”)是研究鳞翅目生态,发育和进化的模型生物。在这里,我们提出了B. anynana的基因组序列草案,以作为该重要模型物种当前和未来研究的基因组资源。使用来自近交雌性的DNA构建了七个插入片段大小在350 bp至20 kb之间的文库,并使用Illumina和PacBio技术进行了测序。将128 Gb的Illumina原始数据过滤到124 Gb,并组装为475 Mb的最终大小(〜×260组装覆盖率)。使用伴侣对,转录组和PacBio数据将重叠群支架化为10800个序列,N50为638 kb(最长支架5 Mb)。基因组由26%的重复元件组成,编码总共22642个预测的蛋白质编码基因。 BUSCO核心后生动物基因组的恢复几乎完成(98%)。总体而言,这些指标与其他最近发表的鳞翅目基因组比较好。我们报告了Bicyclus anynana的高质量基因组序列。基因组装配和带注释的基因模型可从LepBase(http://ensembl.lepbase.org/index.html)获得。

相似文献

  • 外文文献
  • 中文文献
  • 专利
获取原文

客服邮箱:kefu@zhangqiaokeyan.com

京公网安备:11010802029741号 ICP备案号:京ICP备15016152号-6 六维联合信息科技 (北京) 有限公司©版权所有
  • 客服微信

  • 服务号