Identification of novel single nucleotide polymorphism (SNP) in DPB1 gene in ethnic population from West Bengal

摘要

HLA-DP antigens present peptides to CD4+ T cells and play an important role in autoimmune diseases and parasitic infections. We have sequenced HLA-DPB1 exon-2 from the ethnic populations in West Bengal, India and report a novel single nucleotide polymorphism (SNP) - rs111221466. The rs111221466 SNP induced silent mutation from CGA (Arg) to TGA (Stop Codon) and showed a frequency of 83.24%. In conventional sense, the frequency of novel SNP is very high. We have sequenced HLA-DPB1 exon-2 from a Bengali Population in West Bengal, India. HLA-DP antigens present peptides to CD4+ T cells and play an important role in autoimmune diseases and parasitic infections. Here, we report a novel single nucleotide polymorphism of HLA-DPB1 gene in the population. rs111221466 showed a frequency of 83.24, which is important to note, in view of common polymorphisms involved in disease susceptibility.