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Identification of Key Candidate Genes and Pathways in Endometrial Cancer by Integrated Bioinformatical Analysis

机译:通过综合生物信息学分析鉴定子宫内膜癌中关键候选基因和途径

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Endometrial Cancer is the most common female genital tract malignancy, its pathogenesis is complex, not yetfully described. To identify key genes of Endometrial Cancer we downloaded the gene chip GSE17025 from the GeneExpression Omnibus database. Differentially expressed genes (DEGs) were identified through the GEO2R analysistool. Functional and pathway enrichment analysis were performed for DEGs using DAVID database. The network ofprotein–protein-interaction (PPI) was established by STRING website and visualized by Cytoscape. Then, functionaland pathway enrichment analysis of DEGS were performed by DAVID database. A total of 1000 significant differencesgenes were obtained, contain 362 up-regulated genes and 638 down-regulated genes. PCDH10, SLC6A2, OGN,SFRP4, TRH, ANGPTL, FOSB are down-regulated genes. The gene of IGH, CCL20, ELF5, LTF, ASPM expressionlevel in tumor patients are up-regulated. Biological function of enrichment include metabolism of xenobiotics bycytochrome P450, MAPK signaling pathway, Serotonergic synapse, Protein digestion and absorption, IL-17 signalingpathway, Chemokine signaling pathway, HIF-1 signaling pathway, p53 signaling pathway. All in all, the current studyto determine endometrial differentially expressed genes and biological function, comprehensive analysis of intrauterinemembrane carcinoma pathogenesis mechanism, and might be used as molecular targets and diagnostic biomarkers forthe treatment of endometrial cancer.
机译:子宫内膜癌是女性生殖道最常见的恶性肿瘤,其发病机制复杂,尚未有详细描述。为了鉴定子宫内膜癌的关键基因,我们从GeneExpression Omnibus数据库下载了基因芯片GSE17025。通过GEO2R分析工具鉴定了差异表达基因(DEG)。使用DAVID数据库对DEG进行功能和途径富集分析。蛋白质-蛋白质相互作用(PPI)网络由STRING网站建立,并由Cytoscape可视化。然后,用DAVID数据库进行DEGS的功能和途径富集分析。共获得1000个显着差异基因,包含362个上调基因和638个下调基因。 PCDH10,SLC6A2,OGN,SFRP4,TRH,ANGPTL,FOSB是下调的基因。肿瘤患者中IGH,CCL20,ELF5,LTF,ASPM的基因表达水平上调。富集的生物学功能包括异源生物的细胞色素P450代谢,MAPK信号通路,血清素能突触,蛋白质消化吸收,IL-17信号通路,趋化因子信号通路,HIF-1信号通路,p53信号通路。总而言之,目前的研究旨在确定子宫内膜差异表达基因和生物学功能,全面分析子宫内膜癌的发病机理,并可作为治疗子宫内膜癌的分子靶标和诊断生物标志物。

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