Nitrogenase genes in non-cyanobacterial plankton: prevalence, diversity and regulation in marine waters

摘要

ABSTRACT: Marine waters are generally considered to be nitrogen (N) limited and are therefore favourable environments for diazotrophs, i.e. organisms converting atmospheric N₂ into ammonium or nitrogen oxides available for growth. In some regions, this import of N supports up to half of the primary productivity. Diazotrophic Cyanobacteria appear to be the major contributors to marine N₂ fixation in surface waters, whereas the contribution of heterotrophic or chemoautotrophic diazotrophs to this process is usually regarded inconsequential. Culture-independent studies reveal that non-cyanobacterial diazotrophs are diverse, widely distributed, and actively expressing the nitrogenase gene in marine and estuarine environments. The detection of nifH genes and nifH transcripts, even in N-replete marine waters, suggests that N₂ fixation is an ecologically important process throughout the oceans. Because this process is highly sensitive to and inhibited by molecular oxygen (O₂), diazotrophy requires efficient scavenging of intracellular O₂ or growth in environments with low ambient O₂ concentration. Particles with interior low-O₂ micro-zones and oceanic oxygen minimum zones are just 2 potential habitats suitable for N₂ fixation by non-cyanobacterial diazotrophs. Our ignorance about the regulation of N₂ fixation by non-Cyanobacteria in their natural marine environments currently prevents an evaluation of their importance in marine N cycling and budgets. A review of the molecular data on distribution and expression of nifH genes in non-Cyanobacteria suggests that further study of the role of these Bacteria in N cycling at local, regional and global scales is needed.