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A Patch-Based Method for Repetitive and Transient Event Detection in Fluorescence Imaging

机译:基于补丁的荧光成像重复和瞬态事件检测方法

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摘要

Automatic detection and characterization of molecular behavior in large data sets obtained by fast imaging in advanced light microscopy become key issues to decipher the dynamic architectures and their coordination in the living cell. Automatic quantification of the number of sudden and transient events observed in fluorescence microscopy is discussed in this paper. We propose a calibrated method based on the comparison of image patches expected to distinguish sudden appearing/vanishing fluorescent spots from other motion behaviors such as lateral movements. We analyze the performances of two statistical control procedures and compare the proposed approach to a frame difference approach using the same controls on a benchmark of synthetic image sequences. We have then selected a molecular model related to membrane trafficking and considered real image sequences obtained in cells stably expressing an endocytic-recycling trans-membrane protein, the Langerin-YFP, for validation. With this model, we targeted the efficient detection of fast and transient local fluorescence concentration arising in image sequences from a data base provided by two different microscopy modalities, wide field (WF) video microscopy using maximum intensity projection along the axial direction and total internal reflection fluorescence microscopy. Finally, the proposed detection method is briefly used to statistically explore the effect of several perturbations on the rate of transient events detected on the pilot biological model.
机译:在先进的光学显微镜中通过快速成像获得的大数据集中的分子行为的自动检测和表征,成为破解动态结构及其在活细胞中的协调性的关键问题。本文讨论了在荧光显微镜下观察到的突发事件和瞬态事件数量的自动定量。我们提出了一种基于图像补丁比较的校准方法,该补丁有望将突然出现/消失的荧光斑与其他运动行为(例如横向运动)区分开。我们分析了两种统计控制程序的性能,并在合成图像序列的基准上使用相同的控件将建议的方法与帧差方法进行了比较。然后,我们选择了与膜运输有关的分子模型,并考虑了在稳定表达内吞再循环跨膜蛋白Langerin-YFP的细胞中获得的真实图像序列,以进行验证。使用此模型,我们的目标是有效检测快速和瞬态局部荧光浓度,该浓度来自由两种不同的显微镜模式提供的数据库中图像序列中产生的快速和瞬时局部荧光浓度,宽视野(WF)视频显微镜使用沿轴向的最大强度投影和全内反射荧光显微镜。最后,所提出的检测方法被简要地用于统计地探索几种扰动对先导生物学模型上检测到的瞬态事件发生率的影响。

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