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APICURON: a database to credit and acknowledge the work of biocurators

机译:Apicuron:信用数据库并承认生物师的工作

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摘要

APICURON is an open and freely accessible resource that tracks and credits the work of biocurators across multiple participating knowledgebases. Biocuration is essential to extract knowledge from research data and make it available in a structured and standardized way to the scientific community. However, processing biological data—mainly from literature—requires a huge effort that is difficult to attribute and quantify. APICURON collects biocuration events from third-party resources and aggregates this information, spotlighting biocurator contributions. APICURON promotes biocurator engagement implementing gamification concepts like badges, medals and leaderboards and at the same time provides a monitoring service for registered resources and for biocurators themselves. APICURON adopts a data model that is flexible enough to represent and track the majority of biocuration activities. Biocurators are identified through their Open Researcher and Contributor ID. The definition of curation events, scoring systems and rules for assigning badges and medals are resource-specific and easily customizable. Registered resources can transfer curation activities on the fly through a secure and robust Application Programming Interface (API). Here, we show how simple and effective it is to connect a resource to APICURON, describing the DisProt database of intrinsically disordered proteins as a use case. We believe APICURON will provide biological knowledgebases with a service to recognize and credit the effort of their biocurators, monitor their activity and promote curator engagement.
机译:Apicuron是一个开放和自由的可访问的资源,可追踪和学分跨多个参与知识库的生物枢纽的工作。生物趋势对于从研究数据提取知识并使其以结构化和标准化的方式提供给科学界。然而,处理生物数据 - 主要来自文献 - 需要巨大的努力,这难以归因和量化。 Apicuron从第三方资源中收集酶萌发事件,并汇总了这些信息,聚焦了生物仪的贡献。 Apicuron促进了生物枢纽订婚,实现了徽章,奖牌和排行榜等徽章,奖牌和排行榜,并同时为注册资源和生物调节器本身提供监控服务。 Apicuron采用一种足够灵活的数据模型来代表和跟踪大多数酶活性。通过其开放的研究员和贡献者ID来确定生物调位器。策划事件的定义,分配徽章和奖牌的规则是特定于资源的,并且易于定制。已注册的资源可以通过安全且强大的应用程序编程接口(API)来传输策策活动。在这里,我们展示了将资源连接到Apicuron的简单和有效性,描述了本质上无序蛋白质作为用例的解调数据库。我们认为apicuron将提供与服务的生物学知识库,以认识到他们的生物师的努力,监测他们的活动并促进策展人参与。

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