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A multiplex real-time PCR assay for the detection and differentiation of five bovine pinkeye pathogens

机译:多重实时荧光定量PCR检测和鉴别五种牛红眼病原体

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摘要

Infectious bovine keratoconjunctivitis (IBK), also known as pinkeye, is one of the most common eye diseases in cattle. Several pathogens have been associated with IBK cases, however, , , , and bovine herpesvirus type 1 (BHV-1) are most frequently observed. A multiplex real-time PCR assay using two reactions was developed for the detection and differentiation of these five pathogens. Detection sensitivities of the multiplex assays were compared to singleplex reactions testing for the same targets. Correlation coefficients (R ) of >0.99, and PCR efficiencies between 92 and 106% were demonstrated in all singleplex and multiplex real-time PCR reactions. The limits of detection (LOD) of multiplex assays for , , , and BHV-1 were 19, 23, 25, 24 and 26 copies per reaction, respectively. No cross amplification was observed for specificity testing of 179 IBK positive clinical samples and 55 non-target clinical samples. Percentage of clinical samples positive for , , , BHV-1 and were 88.8% (159/179), 75.9% (136/179), 60.3% (108/179), 11.7% (21/179) and 10.0% (18/179), respectively. , and were more prevalent than and BHV-1 in IBK samples collected from animals in this study population. Our data indicates that the multiplex real-time PCR panel assay is highly sensitive and highly specific for the detection and differentiation of the five major pathogens associated with bovine pinkeye.
机译:牛传染性角膜结膜炎(IBK),也称为红眼病,是牛中最常见的眼病之一。几种病原体与IBK病例有关,但是最常观察到1型牛疱疹病毒(BHV-1)。开发了使用两个反应的多重实时PCR分析法,用于检测和区分这五个病原体。将多重分析的检测灵敏度与针对相同靶标的单重反应测试进行了比较。在所有单重和多重实时PCR反应中均显示出> 0.99的相关系数(R),PCR效率在92%至106%之间。 ,,和BHV-1的多重检测的检测限(LOD)每个反应分别为19、23、25、24和26个拷贝。对于179个IBK阳性临床样品和55个非目标临床样品的特异性测试,未观察到交叉扩增。 ,,,BHV-1阳性的临床样本百分比分别为88.8%(159/179),75.9%(136/179),60.3%(108/179),11.7%(21/179)和10.0%(18 / 179)。 ,并且比BHV-1和BHV-1在从该研究人群的动物收集的IBK样品中更为普遍。我们的数据表明,多重实时PCR平板检测对与牛红眼病相关的5种主要病原体的检测和分化具有高度敏感性和高度特异性。

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