Hierarchical clustering of maximum parsimony reconciliations

摘要

Phylogenetic tree reconciliation is a widely-used technique for studying the evolutionary history of pairs of entities such as hosts and parasites, pairs of symbionts, and species and genes. In the duplication-transfer-loss (DTL) model, the biological events that are used to explain the possible discordance between pairs of tree are speciation, duplication, transfer, and loss.