DEER EPR Measurements for Membrane Protein Structures via Bi-functional Spin Labels and Lipodisq Nanoparticles

摘要

Pulsed EPR DEER structural studies of membrane proteins in a lipid bilayer have often been hindered by difficulties in extracting accurate distances when compared to globular proteins. In this study, we employed a combination of three recently developed methodologies: 1) bi-functional spin labels (BSL), 2) SMA-Lipodisq nanoparticles, and 3) Q-band pulsed EPR measurements to obtain improved signal sensitivity, increased transverse relaxation time, and more accurate and precise distances in DEER measurements on the integral membrane protein KCNE1. The KCNE1 EPR data indicated ~2 fold increase in the transverse relaxation time for the SMA-Lipodisq nanoparticles when compared to proteoliposomes, and narrower distance distributions for the BSL when compared to the standard MTSL. The certainty of information content in DEER data obtained for KCNE1 in SMA-Lipodisq nanoparticles is comparable to that in micelles. The combination of techniques will enable researchers to potentially obtain more precise distances in cases where the traditional spin labels and membrane systems yield imprecise distance distributions.