首页> 美国卫生研究院文献>other >Interactive exploration analysis and visualization of complex phenomegenome datasets with ASPIREdb
【2h】

Interactive exploration analysis and visualization of complex phenomegenome datasets with ASPIREdb

机译:使用ASPIREdb交互式探索分析和可视化复杂的表观基因组数据集

代理获取
本网站仅为用户提供外文OA文献查询和代理获取服务,本网站没有原文。下单后我们将采用程序或人工为您竭诚获取高质量的原文,但由于OA文献来源多样且变更频繁,仍可能出现获取不到、文献不完整或与标题不符等情况,如果获取不到我们将提供退款服务。请知悉。

摘要

Identifying variants causal for complex genetic disorders is challenging. With the advent of whole exome and genome sequencing, computational tools are needed to explore and analyze the list of variants for further validation. Correlating genetic variants with subject phenotype is crucial for the interpretation of the disease causing mutations. Often such work is done by teams of researchers who need to share information and coordinate activities. To this end, we have developed a powerful, easy to use web application, ASPIREdb, which allows researchers to search, organize, analyze and visualize variants and phenotypes associated with a set of human subjects. Investigators can annotate variants using publicly available reference databases and build powerful queries to identify subjects or variants of interest. Functional information and phenotypic associations of these genes are made accessible as well. Burden analysis and additional reporting tools allow investigation of variant properties and phenotype characteristics. Projects can be shared, allowing researchers to work collaboratively to build queries and annotate the data. We demonstrate ASPIREdb's functionality using publicly available data sets, showing how the software can be used to accomplish goals that might otherwise require specialized bioinformatics expertise. ASPIREdb is available at .
机译:鉴定引起复杂遗传疾病的变异体具有挑战性。随着整个外显子组和基因组测序的出现,需要使用计算工具来探索和分析变体列表以进行进一步验证。将遗传变异与受试者表型相关联对于解释引起突变的疾病至关重要。通常,这类工作是由需要共享信息和协调活动的研究人员团队完成的。为此,我们开发了一个功能强大且易于使用的Web应用程序ASPIREdb,它使研究人员可以搜索,组织,分析和可视化与一组人类受试者相关的变体和表型。研究人员可以使用可公开获得的参考数据库注释变体,并建立功能强大的查询来识别感兴趣的主题或变体。这些基因的功能信息和表型关联也可以访问。负担分析和其他报告工具可用于研究变异特性和表型特征。可以共享项目,使研究人员可以协作工作以建立查询并注释数据。我们使用公开的数据集演示了ASPIREdb的功能,展示了如何使用该软件来完成可能需要生物信息学专业知识的目标。 ASPIREdb在以下位置可用。

著录项

相似文献

  • 外文文献
  • 中文文献
  • 专利
代理获取

客服邮箱:kefu@zhangqiaokeyan.com

京公网安备:11010802029741号 ICP备案号:京ICP备15016152号-6 六维联合信息科技 (北京) 有限公司©版权所有
  • 客服微信

  • 服务号