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Identification of Immunity-Related Genes in Dialeurodes citri against Entomopathogenic Fungus Lecanicillium attenuatum by RNA-Seq Analysis

机译:RNA-Seq分析法鉴定柠檬对虾病原真菌真菌免疫力相关基因

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摘要

Dialeurodes citri is a major pest in citrus producing areas, and large-scale outbreaks have occurred increasingly often in recent years. Lecanicillium attenuatum is an important entomopathogenic fungus that can parasitize and kill D. citri. We separated the fungus from corpses of D. citri larvae. However, the sound immune defense system of pests makes infection by an entomopathogenic fungus difficult. Here we used RNA sequencing technology (RNA-Seq) to build a transcriptome database for D. citri and performed digital gene expression profiling to screen genes that act in the immune defense of D. citri larvae infected with a pathogenic fungus. De novo assembly generated 84,733 unigenes with mean length of 772 nt. All unigenes were searched against GO, Nr, Swiss-Prot, COG, and KEGG databases and a total of 28,190 (33.3%) unigenes were annotated. We identified 129 immunity-related unigenes in transcriptome database that were related to pattern recognition receptors, information transduction factors and response factors. From the digital gene expression profile, we identified 441 unigenes that were differentially expressed in D. citri infected with L. attenuatum. Through calculated Log2Ratio values, we identified genes for which fold changes in expression were obvious, including cuticle protein, vitellogenin, cathepsin, prophenoloxidase, clip-domain serine protease, lysozyme, and others. Subsequent quantitative real-time polymerase chain reaction analysis verified the results. The identified genes may serve as target genes for microbial control of D. citri.
机译:柑桔网纹病是柑桔产区的主要害虫,近年来大规模爆发已越来越频繁。弱毒杆菌是一种重要的昆虫病原真菌,可以寄生并杀死柑橘D. citri。我们从D. citri幼虫的尸体中分离了真菌。但是,有害生物的健全的免疫防御系统使得很难被昆虫病原真菌感染。在这里,我们使用RNA测序技术(RNA-Seq)建立了柠檬果蝇的转录组数据库,并进行了数字基因表达谱分析,以筛选在感染病原性真菌的柠檬果蝇幼虫的免疫防御中起作用的基因。从头组装产生84,733个单基因,平均长度为772nt。所有单基因均通过GO,Nr,Swiss-Prot,COG和KEGG数据库进行搜索,总共注释了28,190个(33.3%)单基因。我们在转录组数据库中鉴定了129种与免疫相关的单基因,它们与模式识别受体,信息转导因子和反应因子有关。从数字基因表达谱,我们确定了441 unigenes在差异表达中被表达的柠檬D.citri。通过计算的Log2Ratio值,我们确定了表达倍数变化明显的基因,包括表皮蛋白,卵黄蛋白原,组织蛋白酶,酚氧化酶,剪切域丝氨酸蛋白酶,溶菌酶等。随后的定量实时聚合酶链反应分析验证了结果。鉴定出的基因可作为控制柑橘(D. citri )的靶基因。

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