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Perturbation Approach for Computing Infrared Spectra of the Local Mode of Probe Molecules

机译:探针分子局部模态红外光谱的摄动方法

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摘要

Linear and two-dimensional infrared (IR) spectroscopy of site-specific probe molecules provides an opportunity to gain a molecular-level understanding of the local hydrogen-bonding network, conformational dynamics, and long-range electrostatic interactions in condensed-phase and biological systems. A challenge in computation is to determine the time-dependent vibrational frequencies that incorporate explicitly both nuclear quantum effects of vibrational motions and an electronic structural representation of the potential energy surface. In this paper, a nuclear quantum vibrational perturbation (QVP) method is described for efficiently determining the instantaneous vibrational frequency of a chromophore in molecular dynamics simulations. Computational efficiency is achieved through the use of (a) discrete variable representation of the vibrational wave functions, (b) a perturbation theory to evaluate the vibrational energy shifts due to solvent dynamic fluctuations, and (c) a combined QM/MM potential for the systems. It was found that first-order perturbation is sufficiently accurate, enabling time-dependent vibrational frequencies to be obtained on the fly in molecular dynamics. The QVP method is illustrated in the mode-specific linear and 2D-IR spectra of the H–Cl stretching frequency in the HCl–water clusters and the carbonyl stretching vibration of acetone in aqueous solution. To further reduce computational cost, a hybrid strategy was proposed, and it was found that the computed vibrational spectral peak position and line shape are in agreement with experimental results. In addition, it was found that anharmonicity is significant in the H–Cl stretching mode, and hydrogen-bonding interactions further enhance anharmonic effects. The present QVP method complements other computational approaches, including path integral-based molecular dynamics, and represents a major improvement over the electrostatics-based spectroscopic mapping procedures.
机译:特定探针分子的线性和二维红外(IR)光谱学提供了一个机会,使您可以在分子水平上了解缩合和生物系统中的局部氢键网络,构象动力学以及远距离静电相互作用。计算中的挑战是确定随时间变化的振动频率,该频率必须明确包含振动运动的核量子效应和势能表面的电子结构表示。本文介绍了一种用于在分子动力学模拟中有效确定生色团的瞬时振动频率的核量子振动扰动(QVP)方法。通过使用(a)振动波函数的离散变量表示,(b)扰动理论来评估由于溶剂动态波动而引起的振动能转移以及(c)组合QM / MM势的计算效率来实现计算效率系统。发现一阶扰动足够精确,从而可以在分子动力学中动态获得时间相关的振动频率。 QVP方法在HCl-水团簇中H–Cl的拉伸频率和丙酮在水溶液中的羰基拉伸振动的模式特定线性和2D-IR光谱中得到了说明。为了进一步降低计算成本,提出了一种混合策略,发现计算出的振动谱峰位置和线形与实验结果吻合。另外,还发现在H–Cl拉伸模式下非谐性很明显,氢键相互作用进一步增强了非谐作用。本QVP方法是对其他计算方法(包括基于路径积分的分子动力学)的补充,是对基于静电的光谱映射程序的一项重大改进。

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