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Transcriptome profiling with focus on potential key genes for wing development and evolution in Megaloprepus caerulatus the damselfly species with the worlds largest wings

机译:转录组谱分析侧重于有世界最大翅膀的豆娘物种Megaloprepus caerulatus翅膀发育和进化的潜在关键基因

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摘要

The evolution, development and coloration of insect wings remains a puzzling subject in evolutionary research. In basal flying insects such as Odonata, genomic research regarding bauplan evolution is still rare. Here we focus on the world’s largest odonate species—the “forest giant” Megaloprepus caerulatus, to explore its potential for looking deeper into the development and evolution of wings. A recently discovered cryptic species complex in this genus previously considered monotypic is characterized by morphological differences in wing shape and color patterns. As a first step toward understanding wing pattern divergence and pathways involved in adaptation and speciation at the genomic level, we present a transcriptome profiling of M. caerulatus using RNA-Seq and compare these data with two other odonate species. The de novo transcriptome assembly consists of 61,560 high quality transcripts and is approximately 93% complete. For almost 75% of the identified transcripts a possible function could be assigned: 48,104 transcripts had a hit to an InterPro protein family or domain, and 28,653 were mapped to a Gene Ontology term. In particular, we focused on genes related to wing development and coloration. The comparison with two other species revealed larva-specific genes and a conserved ‘core’ set of over 8,000 genes forming orthologous clusters with Ischnura elegans and Ladona fulva. This transcriptome may provide a first point of reference for future research in odonates addressing questions surrounding the evolution of wing development, wing coloration and their role in speciation.
机译:昆虫翅膀的进化,发育和着色仍然是进化研究中一个令人费解的话题。在诸如昆虫纲的基础飞行昆虫中,关于鲍兰进化的基因组研究仍然很少。在这里,我们重点研究世界上最大的齿形物种-“森林巨人” Megaloprepus caerulatus,以探索其深入研究机翼发育和进化的潜力。该属中最近发现的一种隐性物种复合物,以前被认为是单型的,其特征是机翼形状和颜色模式的形态差异。作为了解机翼模式差异和在基因组水平上参与适应和物种形成的途径的第一步,我们介绍了使用RNA-Seq对铜绿假单胞菌进行转录组分析,并将这些数据与其他两个齿形物种进行了比较。从头转录组装配包含61,560个高质量的转录本,大约完成了93%。对于将近75%的已识别转录本,可以分配可能的功能:48,104个转录本对InterPro蛋白质家族或结构域有影响,而28,653个已映射到基因本体学术语。特别是,我们专注于与机翼发育和着色有关的基因。与另外两个物种的比较揭示了幼虫特有的基因和一个保守的“核心”集合,该集合由8,000多个基因组成,与艾氏线虫和Ladona fulva形成直系同源簇。该转录组可能为今后在齿状棘突研究中解决与机翼发育,机翼着色及其在物种形成中的作用有关的问题提供参考。

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