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Sparse deconvolution of high-density super-resolution images

机译:高密度超分辨率图像的稀疏反卷积

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摘要

In wide-field super-resolution microscopy, investigating the nanoscale structure of cellular processes, and resolving fast dynamics and morphological changes in cells requires algorithms capable of working with a high-density of emissive fluorophores. Current deconvolution algorithms estimate fluorophore density by using representations of the signal that promote sparsity of the super-resolution images via an L1-norm penalty. This penalty imposes a restriction on the sum of absolute values of the estimates of emitter brightness. By implementing an L0-norm penalty – on the number of fluorophores rather than on their overall brightness – we present a penalized regression approach that can work at high-density and allows fast super-resolution imaging. We validated our approach on simulated images with densities up to 15 emitters per μm-2 and investigated total internal reflection fluorescence (TIRF) data of mitochondria in a HEK293-T cell labeled with DAKAP-Dronpa. We demonstrated super-resolution imaging of the dynamics with a resolution down to 55 nm and a 0.5 s time sampling.
机译:在宽视野超分辨率显微镜中,研究细胞过程的纳米级结构,并解决细胞中的快速动力学和形态变化,需要能够与高密度发射荧光团一起工作的算法。当前的反卷积算法通过使用信号的表示来估计荧光团密度,该信号表示会通过L1范数惩罚来促进超分辨率图像的稀疏性。该惩罚对发射器亮度的估计的绝对值的总和施加限制。通过对荧光团的数量而不是其整体亮度实施L0规范的惩罚,我们提出了一种惩罚性回归方法,该方法可以在高密度下工作并允许快速超分辨率成像。我们在密度高达15个发射器/μm -2 的模拟图像上验证了我们的方法,并研究了用DAKAP-Dronpa标记的HEK293-T细胞中线粒体的全内反射荧光(TIRF)数据。我们演示了动力学的超分辨率成像,分辨率低至55 nm,采样时间为0.5 s。

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