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Smoothing a rugged protein folding landscape by sequence-based redesign

机译:通过基于序列的重新设计来平滑崎protein的蛋白质折叠环境

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摘要

The rugged folding landscapes of functional proteins puts them at risk of misfolding and aggregation. Serine protease inhibitors, or serpins, are paradigms for this delicate balance between function and misfolding. Serpins exist in a metastable state that undergoes a major conformational change in order to inhibit proteases. However, conformational labiality of the native serpin fold renders them susceptible to misfolding, which underlies misfolding diseases such as α1-antitrypsin deficiency. To investigate how serpins balance function and folding, we used consensus design to create conserpin, a synthetic serpin that folds reversibly, is functional, thermostable, and polymerization resistant. Characterization of its structure, folding and dynamics suggest that consensus design has remodeled the folding landscape to reconcile competing requirements for stability and function. This approach may offer general benefits for engineering functional proteins that have risky folding landscapes, including the removal of aggregation-prone intermediates, and modifying scaffolds for use as protein therapeutics.
机译:功能性蛋白质的崎folding折叠结构使它们处于错误折叠和聚集的风险中。丝氨酸蛋白酶抑制剂,或丝氨酸蛋白酶抑制剂,是这种功能与错误折叠之间微妙平衡的范例。丝氨酸蛋白酶抑制剂以亚稳态存在,其经历主要的构象变化以抑制蛋白酶。但是,天然丝氨酸蛋白酶抑制蛋白折叠的构象唇缘使它们易于错误折叠,这是错误折叠疾病的基础,例如α1-抗胰蛋白酶缺乏症。为了研究丝氨酸蛋白酶抑制剂如何平衡功能和折叠,我们使用共有设计来创建conserpin,这是一种可逆折叠的合成丝氨酸蛋白酶抑制剂,具有功能性,热稳定性和抗聚合性。其结构,折叠和动力学特性的表征表明,共识设计已经重塑了折叠景观,以协调对稳定性和功能的竞争要求。这种方法可以为具有折叠风险的工程功能蛋白提供一般益处,包括去除易聚集的中间体,以及修饰用作蛋白治疗剂的支架。

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