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Nucleotide-dependent DNA gripping and an end-clamp mechanism regulate the bacteriophage T4 viral packaging motor

机译:依赖核苷酸的DNA夹持和末端钳机制调节噬菌体T4病毒包装马达

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摘要

ATP-powered viral packaging motors are among the most powerful biomotors known. Motor subunits arranged in a ring repeatedly grip and translocate the DNA to package viral genomes into capsids. Here, we use single DNA manipulation and rapid solution exchange to quantify how nucleotide binding regulates interactions between the bacteriophage T4 motor and DNA substrate. With no nucleotides, there is virtually no gripping and rapid slipping occurs with only minimal friction resisting. In contrast, binding of an ATP analog engages nearly continuous gripping. Occasional slips occur due to dissociation of the analog from a gripping motor subunit, or force-induced rupture of grip, but multiple other analog-bound subunits exert high friction that limits slipping. ADP induces comparably infrequent gripping and variable friction. Independent of nucleotides, slipping arrests when the end of the DNA is about to exit the capsid. This end-clamp mechanism increases the efficiency of packaging by making it essentially irreversible.
机译:ATP驱动的病毒包装电机是已知最强大的生物电机之一。排列成环的运动亚基反复抓握并转移DNA,将病毒基因组包装到衣壳中。在这里,我们使用单个DNA操作和快速溶液交换来量化核苷酸结合如何调节噬菌体T4马达和DNA底物之间的相互作用。没有核苷酸,几乎没有抓地力,仅在最小的摩擦阻力下发生了快速滑动。相反,ATP类似物的结合几乎连续进行。偶尔的打滑是由于类似物从抓握的电机子单元上解离,或因力引起的抓地力破裂而引起的,但其他多个类似物结合的子单元则施加了高摩擦力,从而限制了打滑。 ADP引起的抓地力相对较少,并且摩擦力可变。与核苷酸无关,当DNA末端即将离开衣壳时,滑脱会停止。这种末端夹紧机构通过使其基本上不可逆而提高了包装效率。

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