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Excluded volume and ion-ion correlation effects on the ionic atmosphere around B-DNA:Theory simulations and experiments

机译:排除体积和离子-离子相关性对B-DNA周围离子环境的影响:理论模拟和实验

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摘要

The ionic atmosphere around a nucleic acid regulates its stability in aqueous salt solutions. One major source of complexity in biological activities involving nucleic acids arises from the strong influence of the surrounding ions and water molecules on their structural and thermodynamic properties. Here, we implement a classical density functional theory for cylindrical polyelectrolytes embedded in aqueous electrolytes containing explicit (neutral hard sphere) water molecules at experimental solvent concentrations. Our approach allows us to include ion correlations as well as solvent and ion excluded volume effects for studying the structural and thermodynamic properties of highly charged cylindrical polyelectrolytes. Several models of size and charge asymmetric mixtures of aqueous electrolytes at physiological concentrations are studied. Our results are in good agreement with Monte Carlo simulations. Our numerical calculations display significant differences in the ion density profiles for the different aqueous electrolyte models studied. However, similar results regarding the excess number of ions adsorbed to the B-DNA molecule are predicted by our theoretical approach for different aqueous electrolyte models. These findings suggest that ion counting experimental data should not be used alone to validate the performance of aqueous DNA-electrolyte models.
机译:核酸周围的离子气氛调节其在盐水溶液中的稳定性。涉及核酸的生物活性中复杂性的一个主要来源是周围离子和水分子对其结构和热力学性质的强烈影响。在这里,我们对嵌入在含有明显(中性硬球)水分子的水电解质中的圆柱形聚电解质实施了经典的密度泛函理论。我们的方法使我们能够包括离子相关性以及溶剂和离子排除的体积效应,以研究高电荷圆柱形聚电解质的结构和热力学性质。研究了在生理浓度下水性电解质的尺寸和电荷不对称混合物的几种模型。我们的结果与蒙特卡洛模拟非常吻合。我们的数值计算显示了所研究的不同水性电解质模型在离子密度分布上的显着差异。但是,对于不同的水性电解质模型,我们的理论方法可以预测出有关吸附到B-DNA分子上离子过量的类似结果。这些发现表明,不应单独使用离子计数实验数据来验证水性DNA电解质模型的性能。

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