>Summary: QuasR is a package for the integrated analysis of high-throughput sequencing data in R, covering all steps from read preprocessing, alignment and quality control to quantification. QuasR supports different experiment types (including RNA-seq, ChIP-seq and Bis-seq) and analysis variants (e.g. paired-end, stranded, spliced and allele-specific), and is integrated in Bioconductor so that its output can be directly processed for statistical analysis and visualization.>Availability and implementation: QuasR is implemented in R and C/C++. Source code and binaries for major platforms (Linux, OS X and MS Windows) are available from Bioconductor (). The package includes a ‘vignette’ with step-by-step examples for typical work flows.>Contact: >Supplementary information: are available at Bioinformatics online.
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机译：>摘要： QuasR是用于R中高通量测序数据的综合分析的软件包，涵盖了从读取预处理，比对和质量控制到定量的所有步骤。 QuasR支持不同的实验类型（包括RNA-seq，ChIP-seq和Bis-seq）和分析变体（例如，配对末端，绞合，剪接和等位基因特异性），并且集成在Bioconductor中，因此可以直接处理其输出用于统计分析和可视化。>可用性和实现：QuasR在R和C / C ++中实现。可从Bioconductor（）获得主要平台（Linux，OS X和MS Windows）的源代码和二进制文件。该软件包包括一个“渐晕”，其中包含有关典型工作流程的分步示例。>联系方式： >补充信息：可在在线生物信息学中获得。
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