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Evolvability and Single-Genotype Fluctuation in Phenotypic Properties: A Simple Heteropolymer Model

机译:表型特性的可进化性和单基因型波动:简单的杂聚物模型

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摘要

Experiment showed that the response of a genotype to mutation, i.e., the magnitude of mutational change in a phenotypic property, can be correlated with the extent of phenotypic fluctuation among genetic clones. To address a possible statistical mechanical basis for such phenomena at the protein level, we consider a simple hydrophobic-polar lattice protein-chain model with an exhaustive mapping between sequence (genotype) and conformational (phenotype) spaces. Using squared end-to-end distance, RN2, as an example conformational property, we study how the thermal fluctuation of a sequence's RN2 may be predictive of the changes in the Boltzmann average 〈RN2〉 caused by single-point mutations on that sequence. We found that sequences with the same ground-state (RN2)0 exhibit a funnel-like organization under conditions favorable to chain collapse or folding: fluctuation (standard deviation σ) of RN2 tends to increase with mutational distance from a prototype sequence whose 〈RN2〉 deviates little from its (RN2)0. In general, large mutational decreases in 〈RN2〉 or in σ are only possible for some, though not all, sequences with large σ values. This finding suggests that single-genotype phenotypic fluctuation is a necessary, though not sufficient, indicator of evolvability toward genotypes with less phenotypic fluctuations.
机译:实验表明,基因型对突变的反应,即表型特性突变变化的幅度,可以与基因克隆之间的表型波动程度相关。为了在蛋白质水平上解决此类现象的可能的统计力学基础,我们考虑在序列(基因型)和构象(表型)空间之间进行详尽映射的简单疏水-极性晶格蛋白质链模型。以端到端距离RN 2 的平方作为构象性质,我们研究了序列RN 2 的热涨落如何预测序列中的变化。该序列的单点突变引起的玻尔兹曼平均〈RN 2 〉。我们发现具有相同基态(RN 2 )0的序列在有利于链折叠或折叠的条件下表现出漏斗状组织:RN 2 <的波动(标准偏差σ) / sup>倾向于随着距〈RN 2 〉与(RN 2 )0的偏差很小的原型序列的突变距离而增加。通常,onlyRN 2 〉或σ中的较大突变降低仅对于某些(尽管不是全部)具有大σ值的序列是可能的。这一发现表明,单基因型表型波动是向具有较少表型波动的基因型发展的必要但不充分的指标。

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