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Description and analysis of metabolic connectivity and dynamics in the human red blood cell.

机译:描述和分析人类红细胞中的代谢连通性和动力学。

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摘要

The human red blood cell (hRBC) metabolic network is relatively simple compared with other whole cell metabolic networks, yet too complicated to study without the aid of a computer model. Systems science techniques can be used to uncover the key dynamic features of hRBC metabolism. Herein, we have studied a full dynamic hRBC metabolic model and developed several approaches to identify metabolic pools of metabolites. In particular, we have used phase planes, temporal decomposition, and statistical analysis to show hRBC metabolism is characterized by the formation of pseudoequilibrium concentration states. Such equilibria identify metabolic "pools" or aggregates of concentration variables. We proceed to define physiologically meaningful pools, characterize them within the hRBC, and compare them with those derived from systems engineering techniques. In conclusion, systems science methods can decipher detailed information about individual enzymes and metabolites within metabolic networks and provide further understanding of complex biological networks.
机译:与其他全细胞代谢网络相比,人红细胞(hRBC)代谢网络相对简单,但是如果没有计算机模型的帮助,则研究过于复杂。可以使用系统科学技术来揭示hRBC代谢的关键动态特征。在这里,我们已经研究了完整的动态hRBC代谢模型,并开发了几种方法来鉴定代谢物的代谢库。特别是,我们已经使用相平面,时间分解和统计分析来显示hRBC代谢的特征是假平衡浓度状态的形成。这种平衡确定了代谢“池”或浓度变量的集合。我们继续定义生理上有意义的库,在hRBC中对其进行表征,并将其与系统工程技术中的库进行比较。总之,系统科学方法可以解密有关代谢网络中各个酶和代谢物的详细信息,并提供对复杂生物网络的进一步了解。

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