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Novel metaheuristic for parameter estimation in nonlinear dynamic biological systems

机译:非线性动态生物系统中用于参数估计的新型元启发法

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摘要

BackgroundWe consider the problem of parameter estimation (model calibration) in nonlinear dynamic models of biological systems. Due to the frequent ill-conditioning and multi-modality of many of these problems, traditional local methods usually fail (unless initialized with very good guesses of the parameter vector). In order to surmount these difficulties, global optimization (GO) methods have been suggested as robust alternatives. Currently, deterministic GO methods can not solve problems of realistic size within this class in reasonable computation times. In contrast, certain types of stochastic GO methods have shown promising results, although the computational cost remains large. Rodriguez-Fernandez and coworkers have presented hybrid stochastic-deterministic GO methods which could reduce computation time by one order of magnitude while guaranteeing robustness. Our goal here was to further reduce the computational effort without loosing robustness.
机译:背景我们考虑了生物系统非线性动力学模型中的参数估计(模型校准)问题。由于许多此类问题的频繁病态和多模式性,传统的本地方法通常会失败(除非使用参数向量的很好猜测进行初始化)。为了克服这些困难,已提出使用全局优化(GO)方法作为可靠的替代方法。当前,确定性GO方法无法在合理的计算时间内解决此类问题中实际大小的问题。相比之下,某些类型的随机GO方法已显示出令人鼓舞的结果,尽管计算成本仍然很高。 Rodriguez-Fernandez及其同事提出了混合随机确定性GO方法,该方法可以在保证鲁棒性的同时将计算时间减少一个数量级。我们的目标是在不损失鲁棒性的情况下进一步减少计算量。

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