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Quality determination and the repair of poor quality spots in array experiments

机译:阵列实验中的质量确定和劣质斑点的修复

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摘要

BackgroundA common feature of microarray experiments is the occurence of missing gene expression data. These missing values occur for a variety of reasons, in particular, because of the filtering of poor quality spots and the removal of undefined values when a logarithmic transformation is applied to negative background-corrected intensities. The efficiency and power of an analysis performed can be substantially reduced by having an incomplete matrix of gene intensities. Additionally, most statistical methods require a complete intensity matrix. Furthermore, biases may be introduced into analyses through missing information on some genes. Thus methods for appropriately replacing (imputing) missing data and/or weighting poor quality spots are required.
机译:背景技术微阵列实验的共同特征是缺少基因表达数据。这些缺失值的产生有多种原因,特别是由于对数转换应用于负背景校正的强度时,对不良质量斑点的过滤和未定义值的去除。通过具有不完整的基因强度矩阵,可以大大降低执行分析的效率和功效。此外,大多数统计方法都需要完整的强度矩阵。此外,可能会通过缺少某些基因的信息将偏见引入分析。因此,需要用于适当地替换(插补)丢失的数据和/或加权劣质斑点的方法。

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