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Multi-objective dynamic population shuffled frog-leaping biclustering of microarray data

机译:微阵列数据的多目标动态种群改组蛙跳双聚类

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摘要

BackgroundMulti-objective optimization (MOO) involves optimization problems with multiple objectives. Generally, theose objectives is used to estimate very different aspects of the solutions, and these aspects are often in conflict with each other. MOO first gets a Pareto set, and then looks for both commonality and systematic variations across the set. For the large-scale data sets, heuristic search algorithms such as EA combined with MOO techniques are ideal. Newly DNA microarray technology may study the transcriptional response of a complete genome to different experimental conditions and yield a lot of large-scale datasets. Biclustering technique can simultaneously cluster rows and columns of a dataset, and hlep to extract more accurate information from those datasets. Biclustering need optimize several conflicting objectives, and can be solved with MOO methods. As a heuristics-based optimization approach, the particle swarm optimization (PSO) simulate the movements of a bird flock finding food. The shuffled frog-leaping algorithm (SFL) is a population-based cooperative search metaphor combining the benefits of the local search of PSO and the global shuffled of information of the complex evolution technique. SFL is used to solve the optimization problems of the large-scale datasets.
机译:背景技术多目标优化(MOO)涉及具有多个目标的优化问题。通常,这些目标用于估计解决方案的非常不同的方面,并且这些方面经常相互冲突。 MOO首先获取一个Pareto集,然后在整个集中查找通用性和系统性变化。对于大规模数据集,启发式搜索算法(例如EA与MOO技术相结合)是理想的选择。最新的DNA微阵列技术可以研究完整基因组对不同实验条件的转录反应,并产生大量大规模数据集。双聚类技术可以同时对数据集的行和列进行聚类,并且可以从这些数据集中提取更准确的信息。合并需要优化几个冲突的目标,并且可以使用MOO方法解决。作为基于启发式的优化方法,粒子群优化(PSO)模拟了寻找食物的鸟群的运动。改组蛙跳算法(SFL)是一种基于人口的协作搜索隐喻,结合了PSO本地搜索和复杂演化技术的全局信息改组的优势。 SFL用于解决大规模数据集的优化问题。

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