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Differential analysis of glioblastoma multiforme proteome by a 2D-DIGE approach

机译:二维胶质母细胞瘤蛋白质组差异分析

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摘要

BackgroundGenomics, transcriptomics and proteomics of glioblastoma multiforme (GBM) have recently emerged as possible tools to discover therapeutic targets and biomarkers for new therapies including immunotherapy. It is well known that macroscopically complete surgical excision, radiotherapy and chemotherapy have therapeutic limitations to improve survival in these patients. In this study, we used a differential proteomic-based technique (2D-Difference Gel Electrophoresis) coupled with matrix-assisted laser desorption/ionization-time of flight (MALDI-TOF) mass spectrometry to identify proteins that may serve as brain tumor antigens in new therapeutic assays. Five samples of patients presenting a GBM and five samples of microscopically normal brain tissues derived from brain epileptic surgery specimen were labeled and run in 2D-PAGE (Two-Dimensional Polyacrylamide Gel Electrophoresis) with an internal pool sample on each gel. Five gels were matched and compared with DIA (Difference In-gel Analysis) software. Differential spots were picked, in-gel digested and peptide mass fingerprints were obtained.
机译:背景技术最近,多形性胶质母细胞瘤(GBM)的基因组学,转录组学和蛋白质组学已成为发现包括免疫疗法在内的新疗法的治疗靶标和生物标记物的可能工具。众所周知,宏观上完整的手术切除,放射疗法和化学疗法在治疗上有局限性,以提高这些患者的生存率。在这项研究中,我们使用了基于蛋白质组学的差分技术(2D差异凝胶电泳)和基质辅助激光解吸/电离飞行时间(MALDI-TOF)质谱技术,鉴定了可能作为脑肿瘤抗原的蛋白质。新的治疗方法。标记了五个呈现GBM的患者样本和五个源自脑癫痫外科手术标本的显微镜下正常脑组织样本,并在2D-PAGE(二维聚丙烯酰胺凝胶电泳)中运行,每个凝胶上都有内部合并样本。匹配五种凝胶,并与DIA(差异凝胶分析)软件进行比较。挑出差异点,进行凝胶消化,获得肽质量指纹图谱。

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