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Synchronizing genetic relaxation oscillators byintercell signaling

机译:通过同步遗传松弛振荡器小区间信号

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摘要

The ability to design and construct synthetic gene regulatory networks offers the prospect of studying issues related to cellular function in a simplified context; such networks also have many potential applications in biotechnology. A synthetic network exhibiting oscillatory behavior has recently been constructed [Elowitz, M. B. & Leibler, S. (2000) Nature (London) 403, 335–338]. It has also been shown that a natural bacterial quorum-sensing mechanism can be used in a synthetic system to communicate a signal between two populations of cells, such that receipt of the signal causes expression of a target gene [Weiss, R. & Knight, T. F. (2000) in DNA6: Sixth International Meeting on DNA-Based Computers, June 13–17, 2000, Leiden, The Netherlands]. We propose a synthetic gene network in Escherichia coli which combines these two features: the system acts as a relaxation oscillator and uses an intercell signaling mechanism to couple the oscillators and induce synchronous oscillations. We model the system and show that the proposed coupling scheme does lead to synchronous behavior across a population of cells.We provide an analytical treatment of the synchronization process, thedominant mechanism of which is “fast threshold modulation.”
机译:设计和构建合成基因调控网络的能力为在简化的背景下研究与细胞功能有关的问题提供了前景。这样的网络在生物技术中也有许多潜在的应用。最近已经构建了表现出振荡行为的合成网络[Elowitz,M. B.&Leibler,S.(2000)Nature(London)403,335-338]。还已经表明,可以在合成系统中使用天然细菌群体感应机制在两个细胞群之间传递信号,从而信号的接收导致靶基因的表达[Weiss,R.&Knight, DNA6中的TF(2000):第六届基于DNA的计算机国际会议,2000年6月13日至17日,荷兰莱顿]。我们提出了一种在大肠杆菌中合成的基因网络,该网络结合了这两个特征:系统充当松弛振荡器,并使用小区间信号传导机制耦合振荡器并引发同步振荡。我们对该系统进行建模,并表明所提出的耦合方案确实导致了整个细胞群体的同步行为。我们对同步过程进行了分析,其主要机制是“快速阈值调制”。

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