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Mechanisms of action of sacubitril/valsartan on cardiac remodeling: a systems biology approach

机译:屈比特尔/缬沙坦对心脏重构的作用机制:系统生物学方法

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摘要

Sacubitril/Valsartan, proved superiority over other conventional heart failure management treatments, but its mechanisms of action remains obscure. In this study, we sought to explore the mechanistic details for Sacubitril/Valsartan in heart failure and post-myocardial infarction remodeling, using an in silico, systems biology approach. Myocardial transcriptome obtained in response to myocardial infarction in swine was analyzed to address post-infarction ventricular remodeling. Swine transcriptome hits were mapped to their human equivalents using Reciprocal Best (blast) Hits, Gene Name Correspondence, and InParanoid database. Heart failure remodeling was studied using public data available in gene expression omnibus (accession , subseries ), processed using the GEO2R tool. Using the Therapeutic Performance Mapping System technology, dedicated mathematical models trained to fit a set of molecular criteria, defining both pathologies and including all the information available on Sacubitril/Valsartan, were generated. All relationships incorporated into the biological network were drawn from public resources (including KEGG, REACTOME, INTACT, BIOGRID, and MINT). An artificial neural network analysis revealed that Sacubitril/Valsartan acts synergistically against cardiomyocyte cell death and left ventricular extracellular matrix remodeling via eight principal synergistic nodes. When studying each pathway independently, Valsartan was found to improve cardiac remodeling by inhibiting members of the guanine nucleotide-binding protein family, while Sacubitril attenuated cardiomyocyte cell death, hypertrophy, and impaired myocyte contractility by inhibiting PTEN. The complex molecular mechanisms of action of Sacubitril/Valsartan upon post-myocardial infarction and heart failure cardiac remodeling were delineated using a systems biology approach. Further, this dataset provides pathophysiological rationale for the use of Sacubitril/Valsartan to prevent post-infarct remodeling.
机译:沙比特比/缬沙坦已证明优于其他常规心力衰竭治疗方法,但其作用机理仍不清楚。在这项研究中,我们试图通过计算机系统生物学方法探讨沙比特利/缬沙坦在心力衰竭和心肌梗死后重塑中的机制细节。分析了猪响应心肌梗塞而获得的心肌转录组,以解决梗塞后心室重构。猪转录组命中使用互惠最佳(blast)命中,基因名称对应和InParanoid数据库映射到其人类等效物。心力衰竭重塑研究使用基因表达综合(登录,亚系列)中可用的公共数据进行,并使用GEO2R工具进行处理。使用“治疗表现图系统”技术,生成了专门的数学模型,这些模型经过训练以适合一组分子标准,定义了两种病理学,并包括沙必特/缬沙坦上所有可用的信息。纳入生物网络的所有关系均来自公共资源(包括KEGG,REACTOME,INTACT,BIOGRID和MINT)。人工神经网络分析表明,Sacubitril / Valsartan可通过八个主要的协同节点协同对抗心肌细胞死亡和左心室细胞外基质重塑。当独立研究每种途径时,发现缬沙坦可通过抑制鸟嘌呤核苷酸结合蛋白家族的成员来改善心脏重塑,而沙必比尔可通过抑制PTEN减轻心肌细胞的死亡,肥大和受损的心肌收缩力。使用系统生物学方法描述了沙必比/缬沙坦对心肌梗塞后和心力衰竭心脏重塑的复杂分子机制。此外,该数据集提供了使用沙必比/缬沙坦预防梗塞后重塑的病理生理原理。

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