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Suitable DNA Barcoding for Identification and Supervision of Piper kadsura in Chinese Medicine Markets

机译:适用于中药市场中胡椒的鉴定和监管的合适DNA条形码

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摘要

Piper kadsura is a vine-like medicinal plant which is widely used in clinical treatment. However, P. kadsura is often substituted by other materials in the markets, thereby causing health risks. In this study, 38 P. kadsura samples and eight sequences from GenBank, including a closely-related species and common adulterants were collected. This study aimed to identify an effective DNA barcode from four popular DNA loci for P. kadsura authentication. The success rates of PCR amplification, sequencing, and sequence acquisition of matK were 10.5%, 75%, and 7.9%, respectively; for rbcL they were 89.5%, 8.8%, and 7.9%, respectively; ITS2 rates were 86.8%, 3.0%, and 2.6%, respectively, while for psbA-trnH they were all 100%, which is much higher than for the other three loci. The sequences were aligned using Muscle, genetic distances were computed using MEGA 5.2.2, and barcoding gap was performed using TAXON DNA. Phylogenetic analysis showed that psbA-trnH could clearly distinguish P. kadsura from its closely related species and the common adulterant. psbA-trnH was then used to evaluate the fake proportions of P. kadsura. Results showed that 18.4% of P. kadsura samples were fake, indicating that adulterant species exist in the Chinese markets. Two-dimensional DNA barcoding imaging of P. kadsura was conducted, which was beneficial to the management of P. kadsura. We conclude that the psbA-trnH region is a powerful tool for P. kadsura identification and supervision in the current medicine markets.
机译:Piper kadsura是一种藤蔓状的药用植物,广泛用于临床治疗。但是,kassura P. kadsura经常被市场上的其他材料替代,从而造成健康风险。在这项研究中,从GenBank收集了38个假单胞菌样品和8个序列,包括一个密切相关的物种和常见的掺假物。这项研究旨在从P. kadsura身份验证的四个流行的DNA位点中识别出有效的DNA条码。 matK的PCR扩增,测序和序列获取成功率分别为10.5%,75%和7.9%;对于rbcL,分别为89.5%,8.8%和7.9%; ITS2的比率分别为86.8%,3.0%和2.6%,而psbA-trnH的比率均为100%,远高于其他三个基因座。使用肌肉比对序列,使用MEGA 5.2.2计算遗传距离,并使用TAXON DNA进行条形码编码。系统发育分析表明,psbA-trnH可以从其密切相关的物种和常见的掺假品中清楚地区分kasura。然后使用psbA-trnH评估假单胞菌的假比例。结果表明,假山假单胞菌样品中有18.4%是假的,表明在中国市场上存在掺假种。进行了P. kadsura的二维DNA条形码成像,有利于P. kadsura的管理。我们得出的结论是,psbA-trnH区是目前医学市场上假单胞菌鉴定和监管的有力工具。

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