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Unique Down to Our Microbes—Assessment of an Inquiry-Based Metagenomics Activity

机译:深入研究微生物-基于查询的元基因组学活动评估

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摘要

Metagenomics is an important method for studying microbial life. However, undergraduate exposure to metagenomics is hindered by associated software, computing demands, and dataset access. In this inquiry-based activity designed for introductory life science majors and nonmajors, students perform an investigation of the bacterial communities inhabiting the human belly button and associated metagenomics data collected through a citizen science project and visualized using an open-access bioinformatics tool. The activity is designed for attainment of the following student learning outcomes: defining terms associated with metagenomics analyses, describing the biological impact of the microbiota on human health, formulating a hypothesis, analyzing and interpreting metagenomics data to compare microbiota, evaluating a specific hypothesis, and synthesizing a conceptual model as to why bacterial populations vary. This activity was implemented in six introductory biology and biotechnology courses across five institutions. Attainment of student learning outcomes was assessed through completion of a quiz and students’ presentations of their findings. In presentations, students demonstrated their ability to develop novel hypotheses and analyze and interpret metagenomic data to evaluate their hypothesis. In quizzes, students demonstrated their ability to define key terms and describe the biological impact of the microbiota on human health. Student learning gains assessment also revealed that students perceived gains for all student learning outcomes. Collectively, our assessment demonstrates achievement of the learning outcomes and supports the utility of this inquiry-based activity to engage undergraduates in the scientific process via analyses of metagenomics datasets and associated exploration of a microbial community that lives on the human body.
机译:元基因组学是研究微生物生命的重要方法。但是,本科生接触宏基因组学受到相关软件,计算需求和数据集访问的阻碍。在针对基础生命科学专业和非专业专业的基于探究的活动中,学生们对居住在人类肚脐上的细菌群落进行了调查,并通过一个公民科学项目收集了相关的宏基因组学数据,并使用了开放获取的生物信息学工具对其进行了可视化。该活动旨在实现以下学生的学习成果:定义与宏基因组学分析相关的术语,描述微生物群对人类健康的生物学影响,提出假设,分析和解释宏基因组学数据以比较微生物群,评估特定假设以及综合了细菌种群为何变化的概念模型。该活动在五个机构的六个入门生物学和生物技术入门课程中进行。通过完成测验和学生陈述其发现来评估学生的学习成果。在演讲中,学生展示了他们开发新颖假设以及分析和解释宏基因组学数据以评估其假设的能力。在测验中,学生展示了他们定义关键术语并描述微生物对人类健康的生物学影响的能力。学生学习成就评估还显示,学生对所有学生学习成果都感到收获。我们的评估总体上证明了学习成果的实现,并支持通过基于宏基因组学数据集的分析和对生活在人体上的微生物群落的相关探索,使这种基于探究的活动使大学生参与科学过程的效用。

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