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The Revival of the Notes Field: Leveraging the Unstructured Content in Electronic Health Records

机译:笔记领域的复兴:利用电子病历中的非结构化内容

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摘要

>Problem: Clinical practice requires the production of a time- and resource-consuming great amount of notes. They contain relevant information, but their secondary use is almost impossible, due to their unstructured nature. Researchers are trying to address this problems, with traditional and promising novel techniques. Application in real hospital settings seems not to be possible yet, though, both because of relatively small and dirty dataset, and for the lack of language-specific pre-trained models.>Aim: Our aim is to demonstrate the potential of the above techniques, but also raise awareness of the still open challenges that the scientific communities of IT and medical practitioners must jointly address to realize the full potential of unstructured content that is daily produced and digitized in hospital settings, both to improve its data quality and leverage the insights from data-driven predictive models.>Methods: To this extent, we present a narrative literature review of the most recent and relevant contributions to leverage the application of Natural Language Processing techniques to the free-text content electronic patient records. In particular, we focused on four selected application domains, namely: data quality, information extraction, sentiment analysis and predictive models, and automated patient cohort selection. Then, we will present a few empirical studies that we undertook at a major teaching hospital specializing in musculoskeletal diseases.>Results: We provide the reader with some simple and affordable pipelines, which demonstrate the feasibility of reaching literature performance levels with a single institution non-English dataset. In such a way, we bridged literature and real world needs, performing a step further toward the revival of notes fields.
机译:>问题:临床实践要求制作大量耗时和资源的笔记。它们包含相关信息,但是由于其非结构化的性质,几乎不可能对其进行二次使用。研究人员正在尝试使用传统且有前途的新颖技术来解决这一问题。但是,由于数据集相对较小和肮脏,并且由于缺乏针对语言的预先训练模型,因此似乎无法在实际的医院环境中应用。>目标:上述技术的潜力,同时也提高了人们对仍未解决的挑战的认识,这些挑战是IT界和医学从业者必须共同应对的挑战,以实现医院环境中每天产生和数字化的非结构化内容的全部潜力,以改善其结构数据质量并利用数据驱动的预测模型中的洞察力。>方法:在这一程度上,我们提供了有关最新贡献的叙述性文献综述,以将自然语言处理技术应用于自由文本内容电子病历。特别是,我们专注于四个选定的应用领域,即:数据质量,信息提取,情感分析和预测模型以及自动患者队列选择。然后,我们将提供一些经验研究,这些研究是我们在一家专门研究肌肉骨骼疾病的大型教学医院进行的。>结果:我们为读者提供了一些简单且价格合理的渠道,证明了达到文献表现的可行性单个机构非英语数据集的水平。通过这种方式,我们将文学作品与现实世界的需求联系起来,朝着音符领域的复兴迈出了一步。

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