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THz spectroscopy and molecular modeling of bovine serum albumin under various hydration conditions

机译:不同水化条件下牛血清白蛋白的太赫兹光谱和分子模拟

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摘要

Bovine serum albumin (BSA) is the most abundant protein in bovine plasma; its three dimensional structure is yet unknown. We investigated the structure and dynamics of BSA in lyophilized samples, in 10% w/w and 50% w/w BSA aqueous solutions using THz spectroscopy and molecular modeling. THz spectra were recorded with a spectral resolution of 7.4 GHz. Theoretical spectra were simulated using a structural model of BSA based on the homology with the known structure of human serum albumin (HSA). The agreement between simulated THz spectra and THz spectra recorded experimentally allowed us to validate the BSA model and the solution models. Based on these models we investigated the flexibility of dry BSA and of BSA with one hydration layer. The hydrated structure of BSA is less flexible than the structure free of water molecules, except for residues 54 - 104 that are more mobile in the hydrated structure. We also investigated the fluctuations of the water molecules within the first hydration layer and identified two groups of water molecules: one that exhibits small fluctuations and one of highly mobile water molecules. These molecules are associated to highly mobile regions from the proteins and move in positive correlation with the neighboring protein regions. We also propose a BSA dimerization model in which the molecules strongly interact. The fluctuations of the BSA monomers and of their first hydration layer were investigated. The two molecules display similar fluctuation patterns, but one of them is slightly more flexible.
机译:牛血清白蛋白(BSA)是牛血浆中含量最丰富的蛋白质。它的三维结构还未知。我们使用THz光谱和分子模型研究了冻干样品中BSA在10%w / w和50%w / w BSA水溶液中的结构和动力学。以7.4 GHz的光谱分辨率记录了THz光谱。基于与人血清白蛋白(HSA)已知结构的同源性,使用BSA的结构模型模拟理论光谱。模拟的太赫兹光谱和实验记录的太赫兹光谱之间的一致性使我们能够验证BSA模型和解模型。基于这些模型,我们研究了干燥BSA和具有一个水合层的BSA的柔韧性。 BSA的水合结构比没有水分子的结构柔韧性差,除了在水合结构中更易移动的残基54-104。我们还研究了第一水合层中水分子的波动,并确定了两组水分子:波动较小的一组和流动性高的一组水分子。这些分子与蛋白质的高度可移动区域相关联,并与相邻蛋白质区域呈正相关关系移动。我们还提出了一个BSA二聚化模型,其中分子强烈相互作用。研究了BSA单体及其第一水合层的起伏。这两个分子显示出相似的波动模式,但其中一个更为灵活。

著录项

  • 来源
    《Photonics, devices, and systems V》|2011年|p.83060N.1-83060N.9|共9页
  • 会议地点 Prague(CS)
  • 作者单位

    Dept. of Anatomy, Animal Physiology and Biophysics, Faculty of Biology, University of Bucharest, Splaiul Independentei 91-95, Bucharest, Romania, 050095;

    Dept. of Anatomy, Animal Physiology and Biophysics, Faculty of Biology, University of Bucharest, Splaiul Independentei 91-95, Bucharest, Romania, 050095;

    Dept. of Anatomy, Animal Physiology and Biophysics, Faculty of Biology, University of Bucharest, Splaiul Independentei 91-95, Bucharest, Romania, 050095;

    Dept. of Anatomy, Animal Physiology and Biophysics, Faculty of Biology, University of Bucharest, Splaiul Independentei 91-95, Bucharest, Romania, 050095;

    Laboratory of Solid-State Quantum Electronics, National Institute for Laser, Plasma and Radiation Physics, PO Box MG-36, Magurele, Romania, 077125;

    Laboratory of Solid-State Quantum Electronics, National Institute for Laser, Plasma and Radiation Physics, PO Box MG-36, Magurele, Romania, 077125;

    Dept. of Anatomy, Animal Physiology and Biophysics, Faculty of Biology, University of Bucharest, Splaiul Independentei 91-95, Bucharest, Romania, 050095;

  • 会议组织
  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类 工程光学;
  • 关键词

    THz spectroscopy; molecular modeling; protein flexibility; protein dimerization; hydration water;

    机译:太赫兹光谱分子模拟蛋白质柔韧性;蛋白质二聚化;补水;

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