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Fast Minimal Presentations of Bi-graded Persistence Modules

机译:BI-DECADED持久性模块的快速呈现

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Multi-parameter persistent homology is a recent branch of topological data analysis. In this area, data sets are investigated through the lens of homology with respect to two or more scale parameters. The high computational cost of many algorithms calls for a preprocessing step to reduce the input size. In general, a minimal presentation is the smallest possible representation of a persistence module. Lesnick and Wright proposed recently an algorithm (the LW-algorithm) for computing minimal presentations based on matrix reduction. In this work, we propose, implement and benchmark several improvements over the LW-algorithm. Most notably, we propose the use of priority queues to avoid extensive scanning of the matrix columns, which constitutes the computational bottleneck in the LW-algorithm, and we combine their algorithm with ideas from the multi-parameter chunk algorithm by Fugacci and Kerber. Our extensive experiments show that our algorithm outperforms the LW-algorithm and computes the minimal presentation for data sets with millions of simplices within a few seconds. Our software is publicly available.
机译:多参数持续同源是最近拓扑数据分析的分支。在该区域中,通过对两个或多个比例参数的同源镜头来研究数据集。许多算法的高计算成本呼叫预处理步骤以降低输入大小。通常,最小的呈现是持久性模块的最小可能表示。 Lesnick和Wright最近提出了一种用于基于矩阵减少计算最小呈现的算法(LW算法)。在这项工作中,我们提出了通过LW算法实现了若干改进的若干改进。最值得注意的是,我们建议使用优先级队列来避免对矩阵列的广泛扫描,这构成了LW算法中的计算瓶颈,并将其算法与Fugacci和Kerber的多参数块算法的思想相结合。我们广泛的实验表明,我们的算法优于LW算法,并在几秒钟内计算了数百万简单的数据集的最小演示。我们的软件是公开的。

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