In this paper, particle scale diffusion is implemented in the discrete element model. We focus on the question of how to calibrate the particle scale diffusion coefficient. Theoretical relation between micro- and macro-diffusion coefficients is derived for the regular 2-D packing. Then this relation is validated in several numerical tests where the macroscopic diffusion coefficient is determined numerically based on the half-time of a desorption scheme. To further test the coupled model, we simulate the diffusion and desorption in the circular sample. The numerical results match the analytical solution very well.
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