Towards Splicing Pattern Detection Based On Cdna Sequences

摘要

This study aims at rapid detection of splicing patterns from given cDNA sequences. When given sequences involve sufficient variety of transcript variants, we can identify all splicing patterns by sequence comparison. Our method searches for partial sequences, each of which appears completely from its beginning to its end, or is completely missed, in each of the given cDNA sequences. Since those partial sequences can be regarded as concatenations of exons, searching for them plays a key role in detecting splicing patterns.