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Model Simplification of Signal Transduction Pathway Networks via a Hybrid Inference Strategy

机译:通过混合推理策略模型简化信号转导通路网络

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A full-scale mathematical model of cellular networks normally involves a large number of variables and parameters. How to effectively develop manageable and reliable models is crucial for effective computation, analysis and design of such systems. The aim of model simplification is to eliminate parts of a model that are unimportant for the properties of interest. In this work, a model reduction strategy via hybrid inference is proposed for signal pathway networks. It integrates multiple techniques including conservation analysis, local sensitivity analysis, principal component analysis and flux analysis to identify the reactions and variables that can be considered to be eliminated from the full-scale model. Using an IκB-NF-κB signalling pathway model as an example, simulation analysis demonstrates that the simplified model quantitatively predicts the dynamic behaviours of the network.
机译:蜂窝网络的全规模数学模型通常涉及大量变量和参数。如何有效开发可管理和可靠的模型对于这种系统的有效计算,分析和设计至关重要。模型简化的目的是消除对感兴趣的性质不重要的模型的部分。在这项工作中,提出了一种通过混合推断的模型减少策略,用于信号通路网络。它集成了多种技术,包括保护分析,局部敏感性分析,主成分分析和助焊剂分析,以识别可以考虑从全尺度模型消除的反应和变量。使用IκB-NF-κB信令路径模型作为示例,仿真分析表明简化模型定量预测网络的动态行为。

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