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Automatic generation of links between heterogeneous genomic databases

机译:异构基因组数据库之间的链接自动生成

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Our goal was to study the feasibility of a system to create links between heterogeneous genomic databases. We developed a test program to build up relationships between the Genome Data Base and the Genetic Sequence Data Bank. We analyzed keywords, probes and cytogenetic locations extracted from both banks to create a network of links. The activation of the network generates new linkage data between those banks. Considering the quantity of new links created (over 50000), we could not make an exhaustive analysis of the results but the tests we performed make us think that our links are accurate. However, we also noticed that the system lacks some sensitivity, mainly due to the use of biological abbreviations or synonyms. Therefore, we propose as a conclusion some ways of enhancing the retrieval efficiency of our system.
机译:我们的目标是研究系统在异构基因组数据库之间创建链接的可行性。我们开发了一个测试程序,以建立基因组数据库和遗传序列数据库之间的关系。我们分析了从两个银行提取的关键词,探针和细胞遗传学位置,以创建链接网络。网络的激活在这些存储体之间生成新的链接数据。考虑到创建的新链接数量(超过50000),我们无法对结果进行详尽的分析,但我们执行的测试使我们认为我们的链接是准确的。但是,我们还注意到该系统缺乏一些敏感性,主要是由于使用生物学缩写或同义词。因此,我们建议结论提高我们系统检索效率的方法。

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