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Automatic generation of links between heterogeneous genomic databases

机译:自动生成异构基因组数据库之间的链接

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Our goal was to study the feasibility of a system to create links between heterogeneous genomic databases. We developed a test program to build up relationships between the Genome Data Base and the Genetic Sequence Data Bank. We analyzed keywords, probes and cytogenetic locations extracted from both banks to create a network of links. The activation of the network generates new linkage data between those banks. Considering the quantity of new links created (over 50000), we could not make an exhaustive analysis of the results but the tests we performed make us think that our links are accurate. However, we also noticed that the system lacks some sensitivity, mainly due to the use of biological abbreviations or synonyms. Therefore, we propose as a conclusion some ways of enhancing the retrieval efficiency of our system.
机译:我们的目标是研究在异类基因组数据库之间创建链接的系统的可行性。我们开发了一个测试程序来建立基因组数据库与遗传序列数据库之间的关系。我们分析了从两个银行提取的关键字,探针和细胞遗传学位置,以创建链接网络。网络的激活会在这些存储库之间生成新的链接数据。考虑到创建的新链接的数量(超过50000),我们无法对结果进行详尽的分析,但是我们执行的测试使我们认为我们的链接是准确的。但是,我们还注意到该系统缺乏一定的敏感性,这主要是由于使用了生物缩写或同义词。因此,作为结论,我们提出了一些提高系统检索效率的方法。

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