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A Novel CAD System for Detecting Acute Rejection of Renal Allografts Based on Integrating Imaging-markers and Laboratory Biomarkers

机译:基于成像标志物和实验室生物标志物的肾脏异体移植急性排斥检测CAD系统

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The goal of this paper is to determine the parameters that are correlated with the biopsy diagnosis of acute renal rejection (AR) post-transplantation, using laboratory biomarkers and (3D+ -value) diffusion weighted MR (DW-MR) image- markers. 16 patients with non-rejection (NR) and 45 patients with AR renal allografts determined by their renal biopsy as a gold standard were included. All kidneys were evaluated using both laboratory biomarkers (e.g., creatinine clearance (CrCl) and serum creatinine (SCr)) and DW-MR image-markers. To extract the latter, DW-MR kidney images were first segmented using a geometric deformable model, then, DW-MR image-markers known as apparent diffusion coefficients (ADCs), were estimated for segmented kidneys at multiple b-values (i.e. strength and timing, of, the, field, gradients, (b50,b 100,,...,b 1000 s/mm2)). A statistical analysis investigating possible correlations between potential biomarkers of AR and the biopsy diagnosis was firstly performed. Two categories of parameters were mainly examined: (i) laboratory biomarkers (CrCl and SCr) and (ii) the average ADC (aADC) at individual b-values. Analysis of Variance(ANOVA) and the likelihood ratio ($chi^{2}$) tests found that both CrCl and SCr affected significantly the likelihood of AR, as did the aADC for the individual b-values of b 100, b 500, b 600, b 700, and b 900s/ mm2. Nevertheless, patient demographics (i.e. age and sex) and the aADC at the remaining b-values had no significant effect. The statistical analysis results encouraged us to investigate if this can lead to building a computer-aided diagnostic (CAD) system with the ability to classify AR from NR renal allografts. To achieve this goal, stacked auto-encoders (SAEs) based on deep learning approach were trained using the fusion of the statistically significant DW-MR image-markers and laboratory biomarkers for the classification purposes. Preliminary results obtained (92% accuracy, 92% sensitivity, and 94% specificity) hold a lot of promise of the presented technique to be reliably used as a noninvasive post-transplantation diagnostic tool.
机译:本文的目的是使用实验室生物标志物和(3D +值)弥散加权MR(DW-MR)图像标志物,确定与移植后急性肾排斥反应(AR)的活检诊断相关的参数。纳入16例非排斥性(NR)患者和45例通过肾脏活检确定为金标准的AR肾同种异体移植患者。使用实验室生物标记物(例如,肌酐清除率(CrCl)和血清肌酐(SCr))和DW-MR图像标记物评估所有肾脏。为了提取后者,首先使用几何可变形模型对DW-MR肾​​脏图像进行分割,然后针对多个b值(例如强度和强度)对分割后的肾脏估计称为表观扩散系数(ADC)的DW-MR图像标记。场的时间梯度,(b50,b 100 ,, ...,b 1000 s / mm 2 ))。首先进行了统计分析,以研究可能的AR的生物标志物与活检诊断之间的相关性。主要检查了两类参数:(i)实验室生物标志物(CrCl和SCr)和(ii)各个b值的平均ADC(aADC)。方差分析(ANOVA)和似然比($ \ chi ^ {2} $)测试发现,CrCl和SCr均显着影响AR的可能性,对于b 100,b 500的各个b值的aADC也是如此,b 600,b 700和b 900s / mm 2 。然而,患者的人口统计数据(即年龄和性别)和剩余b值的aADC值均无显着影响。统计分析结果鼓励我们研究这是否可以导致建立一个计算机辅助诊断(CAD)系统,该系统具有将NR肾同种异体移植中的AR分类的能力。为了实现此目标,基于深度学习方法的堆叠式自动编码器(SAE)使用具有统计意义的DW-MR图像标记和实验室生物标记的融合进行了分类训练。获得的初步结果(92%的准确度,92%的灵敏度和94%的特异性)证明了所提出的技术可以可靠地用作无创移植后诊断工具,因此前景广阔。

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