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3D tomographic reconstruction on HPC cluster of the Kongo Rikishi (Japanese wooden statue of the XIII century)

机译:Kongo Rikishi(十三世纪的日本木制雕像)的HPC群集上的3D层析成像重建

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Computed Tomography is a non-destructive technique for which the object volume is reconstructed from a large series of radiographs acquired at different angles. Information can be retrieved as 2D cross section images allowing the inspection and the classification of the object; moreover, by processing tomographic data, a 3D numerical model of the full-volume sample can be obtained for virtual reality applications or digital archives storage. Computed Tomography is well known, specially in the medical field. However, it is a complex technique as soon as one wants to use it in a different way than in medicine (that means different scale, different energy range, different material composition and so on). The Kongo Rikishi is a Japanese wooden statue (over 200 cm of height) of the XIII century. The restoration has been carried out by the Conservation and Restoration Center La Venaria Reale, Turin, Italy. An high resolution Computed Tomography has been realized by the X-Ray Imaging Group of the Physics Department of Bologna University, Italy. To investigate the whole statue volume, up to 36 shootings are needed and for each of them 720 radiographs are acquired. To obtain the final volume (120 GB) 20 days of calculation are needed with a standard PC. In this work we will show the Proof of Concept that we have done using the Microsoft HPC cluster in Redmond. The Microsoft HPC environment has proved to be dramatically powerful and easy to use letting us reach important results quickly. Simply running many copies of the same software on different chunks of data using 20 cores has lead to an impressive speedup: up to a speed factor of 28. The same code, running on a new generation cluster of 32 cores, completed the elaborations with a speed rate factor of 75. These extraordinary results permit to reconstruct the volume in 6 hours instead of 20 days, making possible the real-time investigation of cultural objects.
机译:计算机断层扫描是一种非破坏性技术,通过从以不同角度采集的大量射线照片重建对象体积。信息可以作为2D横截面图像进行检索,从而可以对物体进行检查和分类。此外,通过处理断层图像数据,可以获得用于虚拟现实应用程序或数字档案存储的完整样本的3D数值模型。计算机断层扫描是众所周知的,特别是在医学领域。但是,一旦人们想以不同于医学的方式使用它(这意味着不同的规模,不同的能量范围,不同的材料组成等),这是一项复杂的技术。 Kongo Rikishi是十三世纪的日本木制雕像(高度超过200厘米)。修复工作由意大利都灵La Venaria Reale保护和修复中心进行。意大利博洛尼亚大学物理系的X射线成像小组已经实现了高分辨率计算机断层扫描。要调查整个雕像的体积,最多需要拍摄36张照片,每个照片需要720幅射线照相。要获得最终体积(120 GB),使用标准PC需要20天的计算时间。在这项工作中,我们将展示使用Redmond中的Microsoft HPC群集完成的概念验证。事实证明,Microsoft HPC环境非常强大且易于使用,可以使我们快速获得重要成果。只需使用20个内核在不同的数据块上运行同一软件的多个副本,就可以实现令人印象深刻的加速:速度因子高达28。在32个内核的新一代集群上运行的相同代码完成了详细的说明。速度因子为75。这些非凡的结果使您可以在6小时而不是20天的时间内重建体积,从而可以对文物进行实时调查。

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