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Programming Languages for Molecular and Genetic Devices

机译:分子和遗传装置的编程语言

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Computational nucleic acid devices show great potential for enabling a broad range of biotechnology applications, including smart probes for molecular biology research, in vitro assembly of complex compounds, high-precision in vitro disease diagnosis and, ultimately, computational thera-nostics inside living cells. This diversity of applications is supported by a range of implementation strategies, including nucleic acid strand displacement, localisation to substrates, and the use of enzymes with polymerase, nickase and exonuclease functionality. However, existing computational design tools are unable to account for these different strategies in a unified manner. This talk presents a programming language that allows a broad range of computational nucleic acid systems to be designed and analysed . We also demonstrate how similar approaches can be incorporated into a programming language for designing genetic devices that are inserted into cells to reprogram their behaviour. The language is used to characterise genetic components for programming populations of cells that communicate and self-organise into spatial patterns . More generally, we anticipate that languages for programming molecular and genetic devices will accelerate the development of future biotechnology applications.
机译:计算核酸设备在实现广泛的生物技术应用方面显示出巨大潜力,包括用于分子生物学研究的智能探针,复杂化合物的体外组装,高精度的体外疾病诊断以及最终在活细胞内进行计算机治疗。应用的多样性是由一系列实施策略支持的,包括核酸链置换,定位于底物以及使用具有聚合酶,切口酶和核酸外切酶功能的酶。但是,现有的计算设计工具无法以统一的方式考虑这些不同的策略。演讲提出了一种编程语言,可以设计和分析各种各样的计算核酸系统。我们还演示了如何将类似的方法整合到编程语言中,以设计用于插入细胞以对其行为进行重新编程的遗传设备。该语言用于表征遗传成分,以对细胞群进行编程,这些细胞群进行交流并自组织成空间模式。更广泛地说,我们预计用于编程分子和遗传装置的语言将加速未来生物技术应用程序的发展。

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