首页> 外文会议>International Workshop on Applied Parallel Computing: State of the Art in Scientific Computing(PARA 2006); 20060618-21; Umea(SE) >Ab Initio Calculations of the Electronic Structure and Magnetism of Iron Porphyrin-Type Molecules: A Benchmarking Study
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Ab Initio Calculations of the Electronic Structure and Magnetism of Iron Porphyrin-Type Molecules: A Benchmarking Study

机译:铁卟啉型分子的电子结构和磁性的从头算计算:一个基准研究

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The iron porphyrin molecule is one of the most important biomolecules. In spite of its importance to life science, on a microscopic scale its electronic properties are not yet well-understood. In order to achieve such understanding we have performed an ab initio computational study of various molecular models for the iron porphyrin molecule. Our ab initio electronic structure calculations are based on the density functional theory (DFT) and have been conducted using both the Generalised Gradient Approximation (GGA) and the GGA+U approach, in which an additional Hubbard-U term is added for the treatment of on-site electron-electron correlations. In our investigations we have, first, optimised the molecular structures by computing the minimal-energy atomic distances, and second, benchmarked our computational approach by comparison to existing calculated results obtained by quantum-chemical methods. We have considered several models of ligated porphyrin (Cl and NH_3 ligated), as well as charged and non-charged molecules. In this way, the changes in the electronic, structural, and magnetic properties of the iron atom have been investigated as a function of the oxidation state and local environment of the iron atom. Our results for some of the model molecules reproduce the earlier quantum-chemical calculations done by Johansson and Sundholm [J. Chem. Phys. 120 (2003) 3229]. We find that the GGA+U approach provides a better description of the molecular electronic properties, which indicates that electron correlation effects on the iron are important and play an essential role, particularly for the spin moment on the iron atom. Also, we proceed beyond the relatively small molecular models to a larger, more realistic porphyrin molecule, for which we also find that the GGA+U results are in better agreement with experiments.
机译:卟啉铁分子是最重要的生物分子之一。尽管它对生命科学很重要,但在微观上它的电子特性尚未得到很好的理解。为了获得这种理解,我们已经对卟啉铁分子的各种分子模型进行了从头算的研究。我们的从头算电子结构计算基于密度泛函理论(DFT),并且已使用广义梯度近似(GGA)和GGA + U方法进行了计算,其中添加了一个额外的Hubbard-U项来处理现场电子-电子相关性。在我们的研究中,我们首先通过计算最小能量原子距离来优化分子结构,其次,通过与通过量子化学方法获得的现有计算结果进行比较,对我们的计算方法进行基准测试。我们考虑了连接卟啉(Cl和NH_3连接)以及带电和不带电分子的几种模型。以这种方式,已经研究了铁原子的电子,结构和磁性的变化,其是铁原子的氧化态和局部环境的函数。我们对某些模型分子的结果重现了Johansson和Sundholm进行的较早的量子化学计算[J.化学物理120(2003)3229]。我们发现,GGA + U方法可以更好地描述分子电子特性,这表明电子对铁的相关作用非常重要,并且起着至关重要的作用,特别是对于铁原子上的自旋矩。同样,我们从相对较小的分子模型出发,开发了一个更大,更现实的卟啉分子,为此,我们还发现GGA + U的结果与实验更加吻合。

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