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Finding Witnesses by Peeling

机译:剥皮找证人

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摘要

In the k-matches problem, we are given a pattern and a text, and for each text location the goal is to list all, but not more than k, matches between the pattern and the text. This problem is one of several string matching problems that ask to not only to find where the pattern matches the text, under different "match" definitions, but also to provide witnesses to the match. Other such problems include: k-aligned ones, k-witnesses, and κ-mismatches. In addition, the solution to several other string matching problems relies on the efficient solution of the witness finding problems. In this paper we provide a general efficient method for solving such witness finding problems. We do so by casting the problem as a generalization of group testing, which we then solve by a process which we call peeling. Using this general framework we obtain improved results for all of the above problems. We also show that our method also solves a couple of problems outside the pattern matching domain.
机译:在k匹配问题中,我们得到了一个模式和一个文本,对于每个文本位置,目标是列出模式和文本之间的所有但不超过k个匹配项。此问题是几个字符串匹配问题之一,这些问题不仅要求查找模式在不同的“匹配”定义下与文本匹配的位置,还要求为匹配提供见证。其他此类问题包括:k对齐问题,k证人和κ不匹配。此外,对其他几个字符串匹配问题的解决方案依赖于发现证人问题的有效解决方案。在本文中,我们提供了一种解决此类证人寻找问题的通用有效方法。为此,我们将问题投射为组测试的概括,然后通过称为剥离的过程来解决。使用这种通用框架,我们可以解决上述所有问题。我们还表明,我们的方法还解决了模式匹配域之外的两个问题。

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