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Drug-drug interaction analysis using heterogeneous biological information network

机译:利用异构生物信息网络进行药物相互作用分析

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As the number of drugs increases, more prescription choices are available for physicians, and consequently the number of drugs administered together has increased. Researchers are working on finding multi-drug prescriptions that are effective and safe. An efficient method for finding DDIs plays a crucial role in this research. In order to address the problem, we construct a heterogeneous biological information network by combining multiple different databases and interaction information. Our network includes the information about genes, proteins, pathways, drugs, side effects, targets and their interactions. We propose a metric to measure the relation strength between two nodes in the network, which is based on the weighted sum of the numbers of paths containing different interaction types. We use the metric to score DDI candidates. We found that the drugs sharing a disease are more likely to have a DDI than the drugs sharing a biomolecular target, and the metric using the weighted sum of the path numbers is effective to rank the potential DDIs. We validated the result with the PharmGKB DDI dataset and the Drugs.com drug interaction checker.
机译:随着药物数量的增加,医生可以选择更多的处方,因此一起给药的药物数量也增加了。研究人员正在努力寻找有效且安全的多药处方。查找DDI的有效方法在这项研究中起着至关重要的作用。为了解决这个问题,我们通过结合多个不同的数据库和交互信息来构建一个异构的生物信息网络。我们的网络包括有关基因,蛋白质,途径,药物,副作用,靶标及其相互作用的信息。我们提出了一种度量标准,用于度量网络中两个节点之间的关系强度,该度量基于包含不同交互类型的路径数的加权总和。我们使用该指标为DDI候选人评分。我们发现,与共有生物分子靶标的药物相比,与疾病共享的药物更可能具有DDI,并且使用路径编号的加权总和进行度量可以有效地排名潜在DDI。我们使用PharmGKB DDI数据集和Drugs.com药物相互作用检查器验证了结果。

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