Template DNA-primer relationship analyzer, template DNA-primer relationship analysis method, template DNA-primer relationship analysis program, template DNA-primer relationship evaluation device, template DNA-primer relationship evaluation method and template DNA-primer relationship Sex evaluation program

摘要

In order to analyze the amplification potential of the primer with respect to the template DNA, a template DNA base sequence acquisition unit for acquiring the base sequence information of the template DNA, a primer base sequence acquisition unit for acquiring the base sequence information of the primer, and a primer base sequence acquisition unit obtained from the template DNA. For the two single-stranded template DNAs and the two primers (hereinafter referred to as the collation target), the collation unit predetermined number of bases extracted by dividing the primer into a predetermined number of bases is used in the binding direction of the collation target. When the matching process is performed each time at a position shifted by one base from the first base and a binding relationship is established at a position of a majority or more of the predetermined number, the relationship between the opposing predetermined number of bases at the matching position. Is generated as a character string (hereinafter referred to as a word) expressed by a predetermined code, and a plurality of words generated by the combineable position coding processing unit using a topic model. It is now equipped with a word classification processing unit that performs processing to classify into topics.