首页> 外国专利> TEMPLATE DNA-PRIMER RELATIONSHIP ANALYZER, TEMPLATE DNA-PRIMER RELATIONSHIP ANALYZING METHOD, TEMPLATE DNA-PRIMER RELATIONSHIP ANALYZING PROGRAM, TEMPLATE DNA-PRIMER RELATIONSHIP EVALUATION DEVICE, TEMPLATE DNA-PRIMER RELATIONSHIP EVALUATION METHOD, AND TEMPLATE DNA-PRIMER RELATIONSHIP EVALUATION PROGRAM

TEMPLATE DNA-PRIMER RELATIONSHIP ANALYZER, TEMPLATE DNA-PRIMER RELATIONSHIP ANALYZING METHOD, TEMPLATE DNA-PRIMER RELATIONSHIP ANALYZING PROGRAM, TEMPLATE DNA-PRIMER RELATIONSHIP EVALUATION DEVICE, TEMPLATE DNA-PRIMER RELATIONSHIP EVALUATION METHOD, AND TEMPLATE DNA-PRIMER RELATIONSHIP EVALUATION PROGRAM

机译:模板DNA-亲缘关系分析仪,模板DNA-亲缘关系分析方法,模板DNA-亲和素关系分析程序,模板DNA-亲和素关系评价装置,模板DNA-亲和素-亲和力评价方法,

摘要

In order to analyze amplifiability of a primer to a template DNA, provided is a template DNA-primer relationship analyzer, comprising: a template DNA-base sequence acquisition unit for acquiring base sequence information of a template DNA; a primer base sequence acquisition unit for acquiring base sequence information of two primers; a couplable position coding processing unit for collating the information about two single-stranded template DNAs obtained from the template DNA and the two primers (hereinafter each referred to as collation targets), wherein a collation unit including a prescribed number of bases, extracted by dividing the primers into pieces with the prescribed number of bases is collated at each position where the collation unit is shifted from a beginning base thereof in the couplable direction of the collation target sequentially one by one, and, when a coupling relationship is established at equal to or more than half of a prescribed number of the positions, a character string (hereinafter, referred to as a word) which represents a relationship of a prescribed number of bases facing at collation positions as a prescribed code; and a word classification processing unit for classifying all words generated in the couplable position coding processing unit into a plurality of topics using a topic model.
机译:为了分析引物对模板DNA的扩增能力,提供了模板DNA-引物关系分析仪,其包括:模板DNA碱基序列获取单元,用于获取模板DNA的碱基序列信息;以及引物碱基序列获取单元,用于获取两个引物的碱基序列信息;结合位置编码处理单元,用于对从模板DNA和两个引物获得的两个单链模板DNA的信息进行核对(以下分别称为核对靶),其中包括规定数目的碱基的核对单元通过除法提取然后,在将核对单元从其起始碱基在核对目标的可结合方向上从其起始碱基开始依次逐个移动的每个位置上,并且当偶联关系被确定为等于在规定数量的位置的一半以上或以下,将表示面对核对位置的规定数量的碱基的关系的字符串(以下称为单词)作为规定代码。单词分类处理单元,其使用主题模型将在可耦合位置编码处理单元中生成的所有单词分类为多个主题。

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