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Feature extraction and normalization algorithms for high-density oligonucleotide gene expression array data
Feature extraction and normalization algorithms for high-density oligonucleotide gene expression array data
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机译:高密度寡核苷酸基因表达阵列数据的特征提取和归一化算法
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摘要
A characteristic intensity of a feature in image data generated by scanning a microarray probe is determined. A set of pixels of the image data that nominally represent the feature is identified. The pixels each have an value (such as an intensity value) associated therewith. For each of a plurality of subsets of the set of pixels, a variation statistic value is determined that corresponds to a variation in the values associated with the pixels of that subset. One of the subsets of pixels is chosen based on the determined variation statistic values. A method is also described to relate a first expression array of probes to a second expression array of probes. A subset of the probe for the arrays is determined based on a comparison of the ordering of the subset of the probes of the second array, according to a particular characteristic of the probes, to the ordering of corresponding probes in the first array according to the particular characteristic of the probes. A relationship of the second expression array to the first expression array is determined based on the subset of probes o f the second expression array to the corresponding probes of the first array.
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